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[jalview.git] / src / jalview / gui / AlignFrame.java

2015-03-03	gmungoc	JAL-845 implement alignment of protein to match cDNA...	blob \| commitdiff
2015-02-27	gmungoc	JAL-845 SplitFrame for "show product" and after alignin...	blob \| commitdiff \| diff to current
2015-02-19	gmungoc	JAL-845 applet colour by tree; translate as cDNA; pull...	blob \| commitdiff \| diff to current
2015-02-13	gmungoc	JAL-845 first rough applet SplitFrame (add parameter...	blob \| commitdiff \| diff to current
2015-02-12	gmungoc	JAL-1633 set file format on 'translate cDNA'	blob \| commitdiff \| diff to current
2015-02-12	gmungoc	Merge remote-tracking branch 'origin/merge/JAL-845_JAL...	blob \| commitdiff \| diff to current
2015-02-11	gmungoc	JAL-845 handling eXpand/Gather split frame views	blob \| commitdiff \| diff to current
2015-02-11	Jim Procter	JAL-1655 JAL-845 special support to set column width...	blob \| commitdiff \| diff to current
2015-02-11	Jim Procter	JAL-845 avoid OOBException when method is called with...	blob \| commitdiff \| diff to current
2015-02-09	Jim Procter	Merge branch 'features/JAL-845splitPaneMergeDevelop...	blob \| commitdiff \| diff to current
2015-02-09	gmungoc	Merge remote-tracking branch 'origin/develop' into	blob \| commitdiff \| diff to current
2015-02-06	gmungoc	JAL-845 further code/tests/refactoring	blob \| commitdiff \| diff to current
2015-02-06	Jim Procter	JAL-1640 new menu allowing view settings to be transfer...	blob \| commitdiff \| diff to current
2015-02-06	Jim Procter	JAL-1640 more properties moved to style bean and ration...	blob \| commitdiff \| diff to current
2015-02-06	Jim Procter	JAL-1640 JAL-966 is for boolean getter on AlignViewportI	blob \| commitdiff \| diff to current
2015-02-03	gmungoc	JAL-845 code/refactoring/tests related to linking DNA...	blob \| commitdiff \| diff to current
2015-02-02	Jim Procter	JAL-1640 updates to use get/setter on viewportI: effici...	blob \| commitdiff \| diff to current
2015-01-30	gmungoc	JAL-845 linked protein/dna 'slave' further PoC function... features/JAL-845linkedProteinDnaEditing	blob \| commitdiff \| diff to current
2015-01-26	gmungoc	Merge branch 'features/JAL-1588saveChimeraSession'...	blob \| commitdiff \| diff to current
2015-01-23	gmungoc	JAL-1635 show warning if less than 3 columns selected...	blob \| commitdiff \| diff to current
2015-01-23	Jim Procter	JAL-1551 JAL-962 formatting and code change ripples...	blob \| commitdiff \| diff to current
2015-01-23	Jim Procter	JAL-1628 drop getShowAnnotation accessor in favour...	blob \| commitdiff \| diff to current
2015-01-22	gmungoc	JAL-1619 refactoring / tests to support 'align linked...	blob \| commitdiff \| diff to current
2015-01-21	Jim Procter	Merge branch 'develop' into feature_29/JAL-1372_referen...	blob \| commitdiff \| diff to current
2015-01-19	gmungoc	JAL-1619 refactored cDNA translation; modified codon...	blob \| commitdiff \| diff to current
2015-01-18	Jim Procter	JAL-1628 employ new AnnotationFile reader method to...	blob \| commitdiff \| diff to current
2015-01-18	gmungoc	JAL-1619 refactoring wip	blob \| commitdiff \| diff to current
2015-01-16	gmungoc	JAL-1619 refactoring in progress for Dna translation	blob \| commitdiff \| diff to current
2015-01-14	gmungoc	JAL-1619 modified repaint after 'Align As' action	blob \| commitdiff \| diff to current
2015-01-13	Charles Ofoegbu	Merge branch 'features/JAL-1553_select-columns-by-annot...	blob \| commitdiff \| diff to current
2015-01-13	Charles Ofoegbu	Refactored AnnotationColumnChoser and AnnotationColorCh...	blob \| commitdiff \| diff to current
2015-01-12	gmungoc	JAL-1619 load/align cDNA for protein (wip)	blob \| commitdiff \| diff to current
2015-01-10	Charles Ofoegbu	JAL-1553 merge commit	blob \| commitdiff \| diff to current
2015-01-10	Charles Ofoegbu	JAL-1553 implementation of column selection by annotati...	blob \| commitdiff \| diff to current
2015-01-09	Jim Procter	Merge branch 'JAL-1372_referenceseq' into feature_29...	blob \| commitdiff \| diff to current
2015-01-08	gmungoc	JAL-1588 part work save/restore of Chimera session	blob \| commitdiff \| diff to current
2015-01-07	gmungoc	JAL-1588 refactoring to StructureViewerBase and related	blob \| commitdiff \| diff to current
2015-01-04	gmungoc	JAL-1619 first draft of 'linked protein and cDNA'	blob \| commitdiff \| diff to current
2014-12-28	gmungoc	JAL-845 first working linked edit protein -> cDNA	blob \| commitdiff \| diff to current
2014-12-22	Jim Procter	Merge: 497958b 68dcaa7	blob \| commitdiff \| diff to current
2014-12-05	Charles Ofoegbu	Merge branch 'features/JAL-1605_html-svg-export' into...	blob \| commitdiff \| diff to current
2014-12-05	Charles Ofoegbu	JAL-1605 added command line support for html export...	blob \| commitdiff \| diff to current
2014-12-05	Charles Ofoegbu	JAL-1605 merge commit	blob \| commitdiff \| diff to current
2014-12-05	Charles Ofoegbu	Change the Html export to utilize svg	blob \| commitdiff \| diff to current
2014-11-28	Jim Procter	Merge branch 'JAL-1517_release282' into develop	blob \| commitdiff \| diff to current
2014-11-28	Jim Procter	JAL-1604 formatting	blob \| commitdiff \| diff to current
2014-11-28	Jim Procter	JAL-1604 revised wording and internationalised dialog	blob \| commitdiff \| diff to current
2014-11-27	Jim Procter	Merge branch 'patchJAL-674_offset' into develop	blob \| commitdiff \| diff to current
2014-11-27	Jim Procter	Merge branch 'patchJAL-674_offset' into Release_2_8_2_B...	blob \| commitdiff \| diff to current
2014-11-27	Jim Procter	JAL-674 JAL-966 new method to retrieve all views	blob \| commitdiff \| diff to current
2014-11-27	Charles Ofoegbu	Merge branch 'bug/JAL-1604_Entire-alignment-submission...	blob \| commitdiff \| diff to current
2014-11-27	Charles Ofoegbu	JAL-1604 Entire sequence submision for MSA job bugfix	blob \| commitdiff \| diff to current
2014-11-25	Charles Ofoegbu	merge commit	blob \| commitdiff \| diff to current
2014-11-25	gmungoc	JFAL-1594 fix Undo bug; enum EditCommand.Action; basic...	blob \| commitdiff \| diff to current
2014-11-24	Jim Procter	Merge branch 'JAL-1569_wuss_vienna_broke' into develop	blob \| commitdiff \| diff to current
2014-11-24	Jim Procter	JAL-1264 update annotation panel dimensions before...	blob \| commitdiff \| diff to current
2014-11-14	Charles Ofoegbu	Merge branch 'feature/JAL-1541_BioJsMSAViewer-export...	blob \| commitdiff \| diff to current
2014-11-14	Charles Ofoegbu	Merge branch 'features/JAL-1541_BioJsMSAViewer-export...	blob \| commitdiff \| diff to current
2014-11-14	Charles Ofoegbu	House keeping	blob \| commitdiff \| diff to current
2014-11-14	Jim Procter	Merge branch 'develop' into JAL-1483_featureBasedTreeCalc	blob \| commitdiff \| diff to current
2014-11-13	Jim Procter	Merge branch 'features/JAL-1469_svg-output-for-figure...	blob \| commitdiff \| diff to current
2014-11-13	Jim Procter	Merge branch 'features/JAL-1469_svg-output-for-figure...	blob \| commitdiff \| diff to current
2014-11-12	Charles Ofoegbu	Added support for SVG Export	blob \| commitdiff \| diff to current
2014-11-12	Jim Procter	Merge branch 'features/typed_annotations_calcId' into...	blob \| commitdiff \| diff to current
2014-11-06	Jim Procter	Merge branch 'features/JAL-1541_BioJsMSAViewer-export...	blob \| commitdiff \| diff to current
2014-11-03	gmungoc	Merge branch 'features/JAL-1152annotationSorting' of...	blob \| commitdiff \| diff to current
2014-11-03	gmungoc	JAL-1152 annotation sorting preferences and help docume...	blob \| commitdiff \| diff to current
2014-11-03	Jim Procter	Merge branch 'develop' into features/JAL-1152annotation...	blob \| commitdiff \| diff to current
2014-10-31	gmungoc	JAL-1152 menu tweaks plus new option to put Autocalc...	blob \| commitdiff \| diff to current
2014-10-30	gmungoc	JAL-1152 with sticky annotation sort order that updates...	blob \| commitdiff \| diff to current
2014-10-30	Jim Procter	JAL-674 register PDB IDs when ever they are resolved...	blob \| commitdiff \| diff to current
2014-10-30	Jim Procter	JAL-1551 format and tidy	blob \| commitdiff \| diff to current
2014-10-30	gmungoc	JAL-1152 prototype of new Annotations menu with sort...	blob \| commitdiff \| diff to current
2014-10-30	Charles Ofoegbu	JAL-1541 BioJs MSA Viewer export option implementation	blob \| commitdiff \| diff to current
2014-10-27	Jim Procter	Merge branch 'Release_2_8_2_Branch' into merge_r282_dev	blob \| commitdiff \| diff to current
2014-10-10	gmungoc	JAL-1481 wrap tooltip in html	blob \| commitdiff \| diff to current
2014-10-08	gmungoc	Merge branch 'Release_2_8_2_Branch' into	blob \| commitdiff \| diff to current
2014-10-07	gmungoc	JAL-1264 wip	blob \| commitdiff \| diff to current
2014-10-03	Jim Procter	JAL-1355 removed all top level html tags from message...	blob \| commitdiff \| diff to current
2014-10-03	gmungoc	JAL-1506 delete all warning; JAL-1264 show/hide annotations	blob \| commitdiff \| diff to current
2014-09-25	gmungoc	JAL-1264 tidy up use of MouseListener for showHideAnnot...	blob \| commitdiff \| diff to current
2014-09-23	darolmar	JAL-1355	blob \| commitdiff \| diff to current
2014-09-23	gmungoc	JAL-1264 first cut of panel for annotation show/hide...	blob \| commitdiff \| diff to current
2014-09-19	darolmar	JAL-1355	blob \| commitdiff \| diff to current
2014-08-08	j.procter@dundee...	JAL-1482 feature renderer and manipulation code refacto...	blob \| commitdiff \| diff to current
2014-08-08	j.procter@dundee...	JAL-1483 move show sequence feature and sequence featur...	blob \| commitdiff \| diff to current
2014-07-18	j.procter@dundee...	ensure the dataset is instantiated before materialising...	blob \| commitdiff \| diff to current
2014-06-06	Jim Procter	JAL-1517 source formatting	blob \| commitdiff \| diff to current
2014-06-06	Jim Procter	JAL-1517 fix copyright for 2.8.2	blob \| commitdiff \| diff to current
2014-06-05	Jim Procter	JAL-1517 update copyright to version 2.8.2	blob \| commitdiff \| diff to current
2014-05-22	Jim Procter	JAL-1503 update version in GPL header	blob \| commitdiff \| diff to current
2014-05-02	Jim Procter	Merge branch 'Release_2_8_1_Branch' into JAL-1372_refer...	blob \| commitdiff \| diff to current
2014-05-01	Jim Procter	JAL-1492 JAL-1397 JAL-643 JAL-969 pull up global and...	blob \| commitdiff \| diff to current
2014-04-21	Jim Procter	JAL-1383 scrubbed envision GUI and documentation	blob \| commitdiff \| diff to current
2014-04-21	Jim Procter	JAL-1485 JAL-1473 use compound i18n messages to constru...	blob \| commitdiff \| diff to current
2014-04-21	Jim Procter	JAL-1466 flag and jalview_properties setting to control...	blob \| commitdiff \| diff to current
2014-04-21	Jim Procter	JAL-1466 new calculation menu option to recover the...	blob \| commitdiff \| diff to current
2014-04-21	Jim Procter	tidy imports	blob \| commitdiff \| diff to current
2014-04-21	Jim Procter	JAL-1473 tree calcs performed with ScoreModelI instances	blob \| commitdiff \| diff to current
2014-04-21	Jim Procter	JAL-1473 menu entries for different score models availa...	blob \| commitdiff \| diff to current
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