JAL-1517 update copyright to version 2.8.2

author Jim Procter <jprocter@dundee.ac.uk>

Thu, 5 Jun 2014 18:59:25 +0000 (19:59 +0100)

committer Jim Procter <jprocter@dundee.ac.uk>

Thu, 5 Jun 2014 18:59:25 +0000 (19:59 +0100)
author Jim Procter <jprocter@dundee.ac.uk>
Thu, 5 Jun 2014 18:59:25 +0000 (19:59 +0100)
committer Jim Procter <jprocter@dundee.ac.uk>
Thu, 5 Jun 2014 18:59:25 +0000 (19:59 +0100)
diff --git a/build.xml b/build.xml

index 5f34f3e..998d42f 100755 (executable)
--- a/build.xml
+++ b/build.xml
@@ -1,6 +1,6 @@
  <?xml version="1.0"?>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/doc/AddingGroovySupport.html b/doc/AddingGroovySupport.html

index 5556629..0cb58c6 100644 (file)
--- a/doc/AddingGroovySupport.html
+++ b/doc/AddingGroovySupport.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/doc/JalviewRNASupport.html b/doc/JalviewRNASupport.html

index e068f3b..23124f4 100644 (file)
--- a/doc/JalviewRNASupport.html
+++ b/doc/JalviewRNASupport.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/doc/building.html b/doc/building.html

index 04639d5..59f4dc3 100755 (executable)
--- a/doc/building.html
+++ b/doc/building.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/doc/developing.html b/doc/developing.html

index 330a156..0e73294 100644 (file)
--- a/doc/developing.html
+++ b/doc/developing.html
@@ -1,6 +1,6 @@
  <!DOCTYPE html SYSTEM "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/doc/index.html b/doc/index.html

index 7d3a278..c551491 100644 (file)
--- a/doc/index.html
+++ b/doc/index.html
@@ -1,6 +1,6 @@
  <!DOCTYPE html SYSTEM "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/doc/newdmobj.html b/doc/newdmobj.html

index e564371..d77fc97 100644 (file)
--- a/doc/newdmobj.html
+++ b/doc/newdmobj.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/examples-jbake/assets/css/ie6.css b/examples-jbake/assets/css/ie6.css

index f333ebc..11c7f65 100644 (file)
--- a/examples-jbake/assets/css/ie6.css
+++ b/examples-jbake/assets/css/ie6.css
@@ -1,5 +1,5 @@
  /**
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/examples-jbake/assets/css/ie7.css b/examples-jbake/assets/css/ie7.css

index 159d07e..27a3f0d 100644 (file)
--- a/examples-jbake/assets/css/ie7.css
+++ b/examples-jbake/assets/css/ie7.css
@@ -1,5 +1,5 @@
  /**
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/examples-jbake/assets/css/reset.css b/examples-jbake/assets/css/reset.css

index 17a8f7b..71df1ed 100644 (file)
--- a/examples-jbake/assets/css/reset.css
+++ b/examples-jbake/assets/css/reset.css
@@ -1,5 +1,5 @@
  /**
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/examples-jbake/assets/css/style.css b/examples-jbake/assets/css/style.css

index 344182b..61a39e9 100644 (file)
--- a/examples-jbake/assets/css/style.css
+++ b/examples-jbake/assets/css/style.css
@@ -1,5 +1,5 @@
  /**
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/examples-jbake/assets/exampleFeatures.txt b/examples-jbake/assets/exampleFeatures.txt

index c16c3d8..85fd06f 100755 (executable)
--- a/examples-jbake/assets/exampleFeatures.txt
+++ b/examples-jbake/assets/exampleFeatures.txt
@@ -1,5 +1,5 @@
  #-------------------------------------------------------------------------------
-# Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+# Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
  # Copyright (C) 2014 The Jalview Authors
  # 
  # This file is part of Jalview.
diff --git a/examples-jbake/assets/javascript/jalview.js b/examples-jbake/assets/javascript/jalview.js

index c9e5d1e..7890854 100644 (file)
--- a/examples-jbake/assets/javascript/jalview.js
+++ b/examples-jbake/assets/javascript/jalview.js
@@ -1,5 +1,5 @@
  /**
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/examples-jbake/templates/header.ftl b/examples-jbake/templates/header.ftl

index d42b314..b0daf29 100644 (file)
--- a/examples-jbake/templates/header.ftl
+++ b/examples-jbake/templates/header.ftl
@@ -1,6 +1,6 @@
  <!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Strict//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd">
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/examples/appletParameters.html b/examples/appletParameters.html

index 7eaf9f7..2f34c46 100644 (file)
--- a/examples/appletParameters.html
+++ b/examples/appletParameters.html
@@ -1,6 +1,6 @@
  <!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Strict//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd">
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/examples/applets.html b/examples/applets.html

index d715a4d..cc85e86 100755 (executable)
--- a/examples/applets.html
+++ b/examples/applets.html
@@ -1,6 +1,6 @@
  <!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Strict//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd">
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/examples/css/ie6.css b/examples/css/ie6.css

index f333ebc..11c7f65 100644 (file)
--- a/examples/css/ie6.css
+++ b/examples/css/ie6.css
@@ -1,5 +1,5 @@
  /**
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/examples/css/ie7.css b/examples/css/ie7.css

index 159d07e..27a3f0d 100644 (file)
--- a/examples/css/ie7.css
+++ b/examples/css/ie7.css
@@ -1,5 +1,5 @@
  /**
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/examples/css/reset.css b/examples/css/reset.css

index 17a8f7b..71df1ed 100644 (file)
--- a/examples/css/reset.css
+++ b/examples/css/reset.css
@@ -1,5 +1,5 @@
  /**
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/examples/css/style.css b/examples/css/style.css

index 344182b..61a39e9 100644 (file)
--- a/examples/css/style.css
+++ b/examples/css/style.css
@@ -1,5 +1,5 @@
  /**
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/examples/embedded.html b/examples/embedded.html

index 6072294..a14dd75 100644 (file)
--- a/examples/embedded.html
+++ b/examples/embedded.html
@@ -1,6 +1,6 @@
  <!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Strict//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd">
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/examples/embeddedWJmol.html b/examples/embeddedWJmol.html

index 77ac6e7..f482ebe 100644 (file)
--- a/examples/embeddedWJmol.html
+++ b/examples/embeddedWJmol.html
@@ -1,6 +1,6 @@
  <!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Strict//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd">
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/examples/exampleFeatures.txt b/examples/exampleFeatures.txt

index c16c3d8..85fd06f 100755 (executable)
--- a/examples/exampleFeatures.txt
+++ b/examples/exampleFeatures.txt
@@ -1,5 +1,5 @@
  #-------------------------------------------------------------------------------
-# Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+# Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
  # Copyright (C) 2014 The Jalview Authors
  # 
  # This file is part of Jalview.
diff --git a/examples/formComplete.html b/examples/formComplete.html

index f4833a6..b37c65e 100644 (file)
--- a/examples/formComplete.html
+++ b/examples/formComplete.html
@@ -1,6 +1,6 @@
  <!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Strict//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd">
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/examples/jalviewLiteJs.html b/examples/jalviewLiteJs.html

index 2b8a29d..891e46e 100644 (file)
--- a/examples/jalviewLiteJs.html
+++ b/examples/jalviewLiteJs.html
@@ -1,6 +1,6 @@
  <!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Strict//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd">
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/examples/javascript/jalview.js b/examples/javascript/jalview.js

index c9e5d1e..7890854 100644 (file)
--- a/examples/javascript/jalview.js
+++ b/examples/javascript/jalview.js
@@ -1,5 +1,5 @@
  /**
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/examples/javascriptLaunch.html b/examples/javascriptLaunch.html

index e7e7232..4a9abfe 100644 (file)
--- a/examples/javascriptLaunch.html
+++ b/examples/javascriptLaunch.html
@@ -1,6 +1,6 @@
  <!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Strict//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd">
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/examples/linkedapplets_ng.html b/examples/linkedapplets_ng.html

index 66af563..9c88710 100644 (file)
--- a/examples/linkedapplets_ng.html
+++ b/examples/linkedapplets_ng.html
@@ -1,6 +1,6 @@
  <!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Strict//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd"> 
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/examples/u_applets.html b/examples/u_applets.html

index 378a895..9402c43 100644 (file)
--- a/examples/u_applets.html
+++ b/examples/u_applets.html
@@ -1,6 +1,6 @@
  <!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Strict//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd">
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/examples/u_embedded.html b/examples/u_embedded.html

index 6ec04e5..8821474 100644 (file)
--- a/examples/u_embedded.html
+++ b/examples/u_embedded.html
@@ -1,6 +1,6 @@
  <!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Strict//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd">
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/examples/u_embeddedWJmol.html b/examples/u_embeddedWJmol.html

index 02a4f10..1d2e03b 100644 (file)
--- a/examples/u_embeddedWJmol.html
+++ b/examples/u_embeddedWJmol.html
@@ -1,6 +1,6 @@
  <!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Strict//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd">
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/examples/u_formComplete.html b/examples/u_formComplete.html

index 15c473e..005e29a 100644 (file)
--- a/examples/u_formComplete.html
+++ b/examples/u_formComplete.html
@@ -1,6 +1,6 @@
  <!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Strict//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd">
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/examples/u_javascriptLaunch.html b/examples/u_javascriptLaunch.html

index b34e195..1ed627b 100644 (file)
--- a/examples/u_javascriptLaunch.html
+++ b/examples/u_javascriptLaunch.html
@@ -1,6 +1,6 @@
  <!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Strict//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd">
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/examples/u_linkedapplets_ng.html b/examples/u_linkedapplets_ng.html

index e605c1a..78a1366 100644 (file)
--- a/examples/u_linkedapplets_ng.html
+++ b/examples/u_linkedapplets_ng.html
@@ -1,6 +1,6 @@
  <!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Strict//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd">
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/help.hs b/help/help.hs

index c56ee9f..064d6bc 100755 (executable)
--- a/help/help.hs
+++ b/help/help.hs
@@ -1,6 +1,6 @@
  <?xml version="1.0" encoding="ISO-8859-1" ?>\r
  <!--\r
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)\r
   * Copyright (C) 2014 The Jalview Authors\r
   * \r
   * This file is part of Jalview.\r
diff --git a/help/help.jhm b/help/help.jhm

index 20f3c88..b199dbf 100755 (executable)
--- a/help/help.jhm
+++ b/help/help.jhm
@@ -1,6 +1,6 @@
  <?xml version="1.0" encoding="ISO-8859-1" ?>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/helpTOC.xml b/help/helpTOC.xml

index 626a244..30665ec 100755 (executable)
--- a/help/helpTOC.xml
+++ b/help/helpTOC.xml
@@ -1,6 +1,6 @@
  <?xml version="1.0" encoding="ISO-8859-1"  ?>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/html/calculations/consensus.html b/help/html/calculations/consensus.html

index aa619e6..7a1921c 100644 (file)
--- a/help/html/calculations/consensus.html
+++ b/help/html/calculations/consensus.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/html/calculations/conservation.html b/help/html/calculations/conservation.html

index e67c1fa..ac00ec4 100755 (executable)
--- a/help/html/calculations/conservation.html
+++ b/help/html/calculations/conservation.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/html/calculations/pairwise.html b/help/html/calculations/pairwise.html

index 52afe7c..fd210ea 100755 (executable)
--- a/help/html/calculations/pairwise.html
+++ b/help/html/calculations/pairwise.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/html/calculations/pca.html b/help/html/calculations/pca.html

index ba9dc30..d109f0b 100755 (executable)
--- a/help/html/calculations/pca.html
+++ b/help/html/calculations/pca.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/html/calculations/quality.html b/help/html/calculations/quality.html

index dc27e97..60d67c2 100755 (executable)
--- a/help/html/calculations/quality.html
+++ b/help/html/calculations/quality.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/html/calculations/recoverInputdata.html b/help/html/calculations/recoverInputdata.html

index 7a40a44..edbd301 100644 (file)
--- a/help/html/calculations/recoverInputdata.html
+++ b/help/html/calculations/recoverInputdata.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/html/calculations/redundancy.html b/help/html/calculations/redundancy.html

index 2dcc475..f222769 100755 (executable)
--- a/help/html/calculations/redundancy.html
+++ b/help/html/calculations/redundancy.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/html/calculations/scorematrices.html b/help/html/calculations/scorematrices.html

index 57f3afe..ef9eceb 100644 (file)
--- a/help/html/calculations/scorematrices.html
+++ b/help/html/calculations/scorematrices.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/html/calculations/sorting.html b/help/html/calculations/sorting.html

index bf60b88..d67ecb7 100755 (executable)
--- a/help/html/calculations/sorting.html
+++ b/help/html/calculations/sorting.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/html/calculations/structureconsensus.html b/help/html/calculations/structureconsensus.html

index af316ed..c8d3bea 100755 (executable)
--- a/help/html/calculations/structureconsensus.html
+++ b/help/html/calculations/structureconsensus.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/html/calculations/tree.html b/help/html/calculations/tree.html

index 11b79ae..1f9317e 100755 (executable)
--- a/help/html/calculations/tree.html
+++ b/help/html/calculations/tree.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/html/calculations/treeviewer.html b/help/html/calculations/treeviewer.html

index 2f03d65..8934684 100755 (executable)
--- a/help/html/calculations/treeviewer.html
+++ b/help/html/calculations/treeviewer.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/html/colourSchemes/abovePID.html b/help/html/colourSchemes/abovePID.html

index 30b9846..4163faf 100755 (executable)
--- a/help/html/colourSchemes/abovePID.html
+++ b/help/html/colourSchemes/abovePID.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/html/colourSchemes/annotationColouring.html b/help/html/colourSchemes/annotationColouring.html

index ba9cbdd..f27b5ea 100755 (executable)
--- a/help/html/colourSchemes/annotationColouring.html
+++ b/help/html/colourSchemes/annotationColouring.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/html/colourSchemes/blosum.html b/help/html/colourSchemes/blosum.html

index fdc3f19..68ea794 100755 (executable)
--- a/help/html/colourSchemes/blosum.html
+++ b/help/html/colourSchemes/blosum.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/html/colourSchemes/buried.html b/help/html/colourSchemes/buried.html

index 640b753..18b8298 100755 (executable)
--- a/help/html/colourSchemes/buried.html
+++ b/help/html/colourSchemes/buried.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/html/colourSchemes/clustal.html b/help/html/colourSchemes/clustal.html

index 1737280..fa34db4 100755 (executable)
--- a/help/html/colourSchemes/clustal.html
+++ b/help/html/colourSchemes/clustal.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/html/colourSchemes/conservation.html b/help/html/colourSchemes/conservation.html

index 1b3d93a..50b99d4 100755 (executable)
--- a/help/html/colourSchemes/conservation.html
+++ b/help/html/colourSchemes/conservation.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/html/colourSchemes/helix.html b/help/html/colourSchemes/helix.html

index 1f1e1b8..05323ac 100755 (executable)
--- a/help/html/colourSchemes/helix.html
+++ b/help/html/colourSchemes/helix.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/html/colourSchemes/hydrophobic.html b/help/html/colourSchemes/hydrophobic.html

index dd5a334..d48500a 100755 (executable)
--- a/help/html/colourSchemes/hydrophobic.html
+++ b/help/html/colourSchemes/hydrophobic.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/html/colourSchemes/index.html b/help/html/colourSchemes/index.html

index b344330..1f951d4 100755 (executable)
--- a/help/html/colourSchemes/index.html
+++ b/help/html/colourSchemes/index.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/html/colourSchemes/nucleotide.html b/help/html/colourSchemes/nucleotide.html

index 90e40ef..f5d0997 100755 (executable)
--- a/help/html/colourSchemes/nucleotide.html
+++ b/help/html/colourSchemes/nucleotide.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/html/colourSchemes/pid.html b/help/html/colourSchemes/pid.html

index 0839749..f13d8f2 100755 (executable)
--- a/help/html/colourSchemes/pid.html
+++ b/help/html/colourSchemes/pid.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/html/colourSchemes/purinepyrimidine.html b/help/html/colourSchemes/purinepyrimidine.html

index 2438416..fceaabb 100644 (file)
--- a/help/html/colourSchemes/purinepyrimidine.html
+++ b/help/html/colourSchemes/purinepyrimidine.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/html/colourSchemes/rnahelicesColouring.html b/help/html/colourSchemes/rnahelicesColouring.html

index daca474..2719d5d 100644 (file)
--- a/help/html/colourSchemes/rnahelicesColouring.html
+++ b/help/html/colourSchemes/rnahelicesColouring.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/html/colourSchemes/strand.html b/help/html/colourSchemes/strand.html

index 58f242e..98bd298 100755 (executable)
--- a/help/html/colourSchemes/strand.html
+++ b/help/html/colourSchemes/strand.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/html/colourSchemes/taylor.html b/help/html/colourSchemes/taylor.html

index 6ff5c7f..3a1942c 100755 (executable)
--- a/help/html/colourSchemes/taylor.html
+++ b/help/html/colourSchemes/taylor.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/html/colourSchemes/textcolour.html b/help/html/colourSchemes/textcolour.html

index 597f618..17459ae 100644 (file)
--- a/help/html/colourSchemes/textcolour.html
+++ b/help/html/colourSchemes/textcolour.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/html/colourSchemes/turn.html b/help/html/colourSchemes/turn.html

index 2860bc8..68e611e 100755 (executable)
--- a/help/html/colourSchemes/turn.html
+++ b/help/html/colourSchemes/turn.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/html/colourSchemes/user.html b/help/html/colourSchemes/user.html

index 015fbe5..ae999ee 100755 (executable)
--- a/help/html/colourSchemes/user.html
+++ b/help/html/colourSchemes/user.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/html/colourSchemes/zappo.html b/help/html/colourSchemes/zappo.html

index 362d98c..ad8751b 100755 (executable)
--- a/help/html/colourSchemes/zappo.html
+++ b/help/html/colourSchemes/zappo.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/html/editing/index.html b/help/html/editing/index.html

index eddea18..e4c7ae0 100755 (executable)
--- a/help/html/editing/index.html
+++ b/help/html/editing/index.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/html/features/annotation.html b/help/html/features/annotation.html

index 0da3a88..8d78c59 100755 (executable)
--- a/help/html/features/annotation.html
+++ b/help/html/features/annotation.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/html/features/annotationsFormat.html b/help/html/features/annotationsFormat.html

index a0a6dae..e0c4d80 100755 (executable)
--- a/help/html/features/annotationsFormat.html
+++ b/help/html/features/annotationsFormat.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/html/features/clarguments.html b/help/html/features/clarguments.html

index ac44c46..049ddde 100644 (file)
--- a/help/html/features/clarguments.html
+++ b/help/html/features/clarguments.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/html/features/codingfeatures.html b/help/html/features/codingfeatures.html

index 7b15ef6..a5bca38 100644 (file)
--- a/help/html/features/codingfeatures.html
+++ b/help/html/features/codingfeatures.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/html/features/commandline.html b/help/html/features/commandline.html

index da47ca5..4ece3e1 100644 (file)
--- a/help/html/features/commandline.html
+++ b/help/html/features/commandline.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/html/features/creatinFeatures.html b/help/html/features/creatinFeatures.html

index ad9cdc2..3933dc1 100644 (file)
--- a/help/html/features/creatinFeatures.html
+++ b/help/html/features/creatinFeatures.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/html/features/cursorMode.html b/help/html/features/cursorMode.html

index 34fe0e1..93ea9a5 100755 (executable)
--- a/help/html/features/cursorMode.html
+++ b/help/html/features/cursorMode.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/html/features/dasfeatures.html b/help/html/features/dasfeatures.html

index 7e2e7e2..b4cb9ad 100644 (file)
--- a/help/html/features/dasfeatures.html
+++ b/help/html/features/dasfeatures.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/html/features/dassettings.html b/help/html/features/dassettings.html

index 45d150e..19cfb00 100644 (file)
--- a/help/html/features/dassettings.html
+++ b/help/html/features/dassettings.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/html/features/editingFeatures.html b/help/html/features/editingFeatures.html

index 2856e70..7027d2d 100644 (file)
--- a/help/html/features/editingFeatures.html
+++ b/help/html/features/editingFeatures.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/html/features/featuresFormat.html b/help/html/features/featuresFormat.html

index d1337eb..aab92d9 100755 (executable)
--- a/help/html/features/featuresFormat.html
+++ b/help/html/features/featuresFormat.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/html/features/featureschemes.html b/help/html/features/featureschemes.html

index 64a4c53..ecdb768 100644 (file)
--- a/help/html/features/featureschemes.html
+++ b/help/html/features/featureschemes.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/html/features/featuresettings.html b/help/html/features/featuresettings.html

index 4e16c1b..d0a9ab7 100755 (executable)
--- a/help/html/features/featuresettings.html
+++ b/help/html/features/featuresettings.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/html/features/groovy.html b/help/html/features/groovy.html

index d4b9f7f..bf477ff 100644 (file)
--- a/help/html/features/groovy.html
+++ b/help/html/features/groovy.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/html/features/hiddenRegions.html b/help/html/features/hiddenRegions.html

index 540a961..ce73420 100644 (file)
--- a/help/html/features/hiddenRegions.html
+++ b/help/html/features/hiddenRegions.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/html/features/jalarchive.html b/help/html/features/jalarchive.html

index f820523..da764c8 100755 (executable)
--- a/help/html/features/jalarchive.html
+++ b/help/html/features/jalarchive.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/html/features/jmol.html b/help/html/features/jmol.html

index 21241d3..8fe88d2 100644 (file)
--- a/help/html/features/jmol.html
+++ b/help/html/features/jmol.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/html/features/multipleViews.html b/help/html/features/multipleViews.html

index f726507..d23d10f 100644 (file)
--- a/help/html/features/multipleViews.html
+++ b/help/html/features/multipleViews.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/html/features/newkeystrokes.html b/help/html/features/newkeystrokes.html

index f17c278..74528c6 100644 (file)
--- a/help/html/features/newkeystrokes.html
+++ b/help/html/features/newkeystrokes.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/html/features/overview.html b/help/html/features/overview.html

index 7d05848..1f553e2 100755 (executable)
--- a/help/html/features/overview.html
+++ b/help/html/features/overview.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/html/features/pdbviewer.html b/help/html/features/pdbviewer.html

index bfed174..41590b4 100755 (executable)
--- a/help/html/features/pdbviewer.html
+++ b/help/html/features/pdbviewer.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/html/features/preferences.html b/help/html/features/preferences.html

index 259b0f4..a94afe1 100755 (executable)
--- a/help/html/features/preferences.html
+++ b/help/html/features/preferences.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/html/features/search.html b/help/html/features/search.html

index 6845be9..f687d56 100755 (executable)
--- a/help/html/features/search.html
+++ b/help/html/features/search.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/html/features/seqfeatures.html b/help/html/features/seqfeatures.html

index 0b14348..89d669b 100755 (executable)
--- a/help/html/features/seqfeatures.html
+++ b/help/html/features/seqfeatures.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/html/features/seqfetch.html b/help/html/features/seqfetch.html

index 212605e..3eb8178 100755 (executable)
--- a/help/html/features/seqfetch.html
+++ b/help/html/features/seqfetch.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/html/features/seqmappings.html b/help/html/features/seqmappings.html

index 157a591..5a0ecf3 100644 (file)
--- a/help/html/features/seqmappings.html
+++ b/help/html/features/seqmappings.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/html/features/varna.html b/help/html/features/varna.html

index 5b7fed1..bfaa5b1 100644 (file)
--- a/help/html/features/varna.html
+++ b/help/html/features/varna.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/html/features/viewingpdbs.html b/help/html/features/viewingpdbs.html

index c2143a3..412a23a 100755 (executable)
--- a/help/html/features/viewingpdbs.html
+++ b/help/html/features/viewingpdbs.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/html/features/wrap.html b/help/html/features/wrap.html

index 4835317..37678a6 100755 (executable)
--- a/help/html/features/wrap.html
+++ b/help/html/features/wrap.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/html/index.html b/help/html/index.html

index ae12479..e528c95 100755 (executable)
--- a/help/html/index.html
+++ b/help/html/index.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/html/io/export.html b/help/html/io/export.html

index a452615..23ad79a 100755 (executable)
--- a/help/html/io/export.html
+++ b/help/html/io/export.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/html/io/exportseqreport.html b/help/html/io/exportseqreport.html

index 837164b..6b8cde2 100644 (file)
--- a/help/html/io/exportseqreport.html
+++ b/help/html/io/exportseqreport.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/html/io/fileformats.html b/help/html/io/fileformats.html

index 6138203..dbc1c94 100755 (executable)
--- a/help/html/io/fileformats.html
+++ b/help/html/io/fileformats.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/html/io/index.html b/help/html/io/index.html

index d803fb0..50e5510 100755 (executable)
--- a/help/html/io/index.html
+++ b/help/html/io/index.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/html/io/modellerpir.html b/help/html/io/modellerpir.html

index 56d0cfc..f95b6dc 100755 (executable)
--- a/help/html/io/modellerpir.html
+++ b/help/html/io/modellerpir.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/html/io/tcoffeescores.html b/help/html/io/tcoffeescores.html

index 9a507c8..3a01030 100644 (file)
--- a/help/html/io/tcoffeescores.html
+++ b/help/html/io/tcoffeescores.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/html/jalviewjnlp.html b/help/html/jalviewjnlp.html

index 191f6b1..edeaccb 100755 (executable)
--- a/help/html/jalviewjnlp.html
+++ b/help/html/jalviewjnlp.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/html/keys.html b/help/html/keys.html

index 9bc7095..4e0c949 100755 (executable)
--- a/help/html/keys.html
+++ b/help/html/keys.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/html/memory.html b/help/html/memory.html

index eec75d3..fd61f3e 100755 (executable)
--- a/help/html/memory.html
+++ b/help/html/memory.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/html/menus/alignmentMenu.html b/help/html/menus/alignmentMenu.html

index fdaa023..b1f7a06 100755 (executable)
--- a/help/html/menus/alignmentMenu.html
+++ b/help/html/menus/alignmentMenu.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/html/menus/alwannotations.html b/help/html/menus/alwannotations.html

index 3a1afc3..975b715 100755 (executable)
--- a/help/html/menus/alwannotations.html
+++ b/help/html/menus/alwannotations.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/html/menus/alwcalculate.html b/help/html/menus/alwcalculate.html

index 93652af..fd93e58 100755 (executable)
--- a/help/html/menus/alwcalculate.html
+++ b/help/html/menus/alwcalculate.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/html/menus/alwcolour.html b/help/html/menus/alwcolour.html

index 3e93057..41c8a15 100755 (executable)
--- a/help/html/menus/alwcolour.html
+++ b/help/html/menus/alwcolour.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/html/menus/alwedit.html b/help/html/menus/alwedit.html

index e5ae321..dd031eb 100755 (executable)
--- a/help/html/menus/alwedit.html
+++ b/help/html/menus/alwedit.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/html/menus/alwfile.html b/help/html/menus/alwfile.html

index bc6c9b1..2718dfe 100755 (executable)
--- a/help/html/menus/alwfile.html
+++ b/help/html/menus/alwfile.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/html/menus/alwformat.html b/help/html/menus/alwformat.html

index 0bdbe91..5a0fddf 100644 (file)
--- a/help/html/menus/alwformat.html
+++ b/help/html/menus/alwformat.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/html/menus/alwselect.html b/help/html/menus/alwselect.html

index 9738e47..2b9b526 100644 (file)
--- a/help/html/menus/alwselect.html
+++ b/help/html/menus/alwselect.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/html/menus/alwview.html b/help/html/menus/alwview.html

index 4248f9a..f59e014 100755 (executable)
--- a/help/html/menus/alwview.html
+++ b/help/html/menus/alwview.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/html/menus/desktopMenu.html b/help/html/menus/desktopMenu.html

index 59b521a..0ce90b4 100755 (executable)
--- a/help/html/menus/desktopMenu.html
+++ b/help/html/menus/desktopMenu.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/html/menus/index.html b/help/html/menus/index.html

index ce4825d..1b4e2f1 100755 (executable)
--- a/help/html/menus/index.html
+++ b/help/html/menus/index.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/html/menus/popupMenu.html b/help/html/menus/popupMenu.html

index 2be6000..24430f1 100755 (executable)
--- a/help/html/menus/popupMenu.html
+++ b/help/html/menus/popupMenu.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/html/menus/wsmenu.html b/help/html/menus/wsmenu.html

index 0e050b1..87229a3 100755 (executable)
--- a/help/html/menus/wsmenu.html
+++ b/help/html/menus/wsmenu.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/html/misc/aaproperties.html b/help/html/misc/aaproperties.html

index e6a2199..af51d1f 100755 (executable)
--- a/help/html/misc/aaproperties.html
+++ b/help/html/misc/aaproperties.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/html/misc/aminoAcids.html b/help/html/misc/aminoAcids.html

index 14650eb..3bb48b6 100755 (executable)
--- a/help/html/misc/aminoAcids.html
+++ b/help/html/misc/aminoAcids.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/html/misc/geneticCode.html b/help/html/misc/geneticCode.html

index 1ca1026..74e11d9 100755 (executable)
--- a/help/html/misc/geneticCode.html
+++ b/help/html/misc/geneticCode.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/html/na/index.html b/help/html/na/index.html

index 366e357..9ae1345 100644 (file)
--- a/help/html/na/index.html
+++ b/help/html/na/index.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/html/privacy.html b/help/html/privacy.html

index f86b6a6..6d38910 100644 (file)
--- a/help/html/privacy.html
+++ b/help/html/privacy.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/html/releases.html b/help/html/releases.html

index 69b009e..1fdf0f2 100755 (executable)
--- a/help/html/releases.html
+++ b/help/html/releases.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/html/vamsas/index.html b/help/html/vamsas/index.html

index f2794b6..18a38da 100644 (file)
--- a/help/html/vamsas/index.html
+++ b/help/html/vamsas/index.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/html/webServices/AACon.html b/help/html/webServices/AACon.html

index 8652e0f..bd1a230 100644 (file)
--- a/help/html/webServices/AACon.html
+++ b/help/html/webServices/AACon.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/html/webServices/JABAWS.html b/help/html/webServices/JABAWS.html

index 467f8d7..6291490 100644 (file)
--- a/help/html/webServices/JABAWS.html
+++ b/help/html/webServices/JABAWS.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/html/webServices/dbreffetcher.html b/help/html/webServices/dbreffetcher.html

index 90bd87d..e063008 100644 (file)
--- a/help/html/webServices/dbreffetcher.html
+++ b/help/html/webServices/dbreffetcher.html
@@ -1,5 +1,5 @@
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/html/webServices/index.html b/help/html/webServices/index.html

index efbe3b1..54e3e7a 100755 (executable)
--- a/help/html/webServices/index.html
+++ b/help/html/webServices/index.html
@@ -1,5 +1,5 @@
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/html/webServices/jnet.html b/help/html/webServices/jnet.html

index 70c57ea..02b92fa 100755 (executable)
--- a/help/html/webServices/jnet.html
+++ b/help/html/webServices/jnet.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/html/webServices/msaclient.html b/help/html/webServices/msaclient.html

index 775eec8..051bda6 100644 (file)
--- a/help/html/webServices/msaclient.html
+++ b/help/html/webServices/msaclient.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/html/webServices/newsreader.html b/help/html/webServices/newsreader.html

index 953e121..7017027 100644 (file)
--- a/help/html/webServices/newsreader.html
+++ b/help/html/webServices/newsreader.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/html/webServices/proteinDisorder.html b/help/html/webServices/proteinDisorder.html

index 254dd5a..5b88c59 100644 (file)
--- a/help/html/webServices/proteinDisorder.html
+++ b/help/html/webServices/proteinDisorder.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/html/webServices/shmr.html b/help/html/webServices/shmr.html

index ad12579..5bcd7f9 100755 (executable)
--- a/help/html/webServices/shmr.html
+++ b/help/html/webServices/shmr.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/html/webServices/urllinks.html b/help/html/webServices/urllinks.html

index ef77c7e..c874a97 100644 (file)
--- a/help/html/webServices/urllinks.html
+++ b/help/html/webServices/urllinks.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/html/webServices/webServicesParams.html b/help/html/webServices/webServicesParams.html

index 690fb0f..76f0db5 100644 (file)
--- a/help/html/webServices/webServicesParams.html
+++ b/help/html/webServices/webServicesParams.html
@@ -1,5 +1,5 @@
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/html/webServices/webServicesPrefs.html b/help/html/webServices/webServicesPrefs.html

index 8ef6e5d..eb78cea 100644 (file)
--- a/help/html/webServices/webServicesPrefs.html
+++ b/help/html/webServices/webServicesPrefs.html
@@ -1,5 +1,5 @@
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/html/whatsNew.html b/help/html/whatsNew.html

index 3ee8534..fe70fb4 100755 (executable)
--- a/help/html/whatsNew.html
+++ b/help/html/whatsNew.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/jalview-jalopy.xml b/jalview-jalopy.xml

index e9c493c..6260057 100755 (executable)
--- a/jalview-jalopy.xml
+++ b/jalview-jalopy.xml
@@ -1,6 +1,6 @@
  <?xml version="1.0" encoding="UTF-8"?>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/nbbuild.xml b/nbbuild.xml

index 95674ff..1fbf3c9 100644 (file)
--- a/nbbuild.xml
+++ b/nbbuild.xml
@@ -1,5 +1,5 @@
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/nbproject/project.xml b/nbproject/project.xml

index ac09730..6c49988 100644 (file)
--- a/nbproject/project.xml
+++ b/nbproject/project.xml
@@ -1,6 +1,6 @@
  <?xml version="1.0" encoding="UTF-8"?>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/resources/embl_mapping.xml b/resources/embl_mapping.xml

index 1b38efb..b6aae2c 100644 (file)
--- a/resources/embl_mapping.xml
+++ b/resources/embl_mapping.xml
@@ -1,6 +1,6 @@
  <?xml version="1.0"?>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/resources/uniprot_mapping.xml b/resources/uniprot_mapping.xml

index 3392d54..092a3c7 100755 (executable)
--- a/resources/uniprot_mapping.xml
+++ b/resources/uniprot_mapping.xml
@@ -1,6 +1,6 @@
  <?xml version="1.0"?>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/schemas/JalviewWsParamSet.xsd b/schemas/JalviewWsParamSet.xsd

index 32696df..0e06413 100644 (file)
--- a/schemas/JalviewWsParamSet.xsd
+++ b/schemas/JalviewWsParamSet.xsd
@@ -1,6 +1,6 @@
  <?xml version="1.0" encoding="UTF-8"?>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/schemas/castor-mapping.xsd b/schemas/castor-mapping.xsd

index 2f30f89..edfc92d 100644 (file)
--- a/schemas/castor-mapping.xsd
+++ b/schemas/castor-mapping.xsd
@@ -1,6 +1,6 @@
  <?xml version="1.0" encoding="UTF-8"?>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/schemas/jalview.nodesc.properties b/schemas/jalview.nodesc.properties

index 8f0dd45..3ecf2a4 100644 (file)
--- a/schemas/jalview.nodesc.properties
+++ b/schemas/jalview.nodesc.properties
@@ -1,5 +1,5 @@
  ##
-# Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+# Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
  # Copyright (C) 2014 The Jalview Authors
  # 
  # This file is part of Jalview.
diff --git a/schemas/jalview.properties b/schemas/jalview.properties

index 2016960..625c06d 100644 (file)
--- a/schemas/jalview.properties
+++ b/schemas/jalview.properties
@@ -1,5 +1,5 @@
  ##
-# Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+# Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
  # Copyright (C) 2014 The Jalview Authors
  # 
  # This file is part of Jalview.
diff --git a/schemas/jalview.xsd b/schemas/jalview.xsd

index 3fdf20c..27f952d 100755 (executable)
--- a/schemas/jalview.xsd
+++ b/schemas/jalview.xsd
@@ -1,6 +1,6 @@
  <?xml version="1.0" encoding="UTF-8"?>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/schemas/jalviewJvV1.xsd b/schemas/jalviewJvV1.xsd

index f222379..92218ff 100644 (file)
--- a/schemas/jalviewJvV1.xsd
+++ b/schemas/jalviewJvV1.xsd
@@ -1,6 +1,6 @@
  <?xml version="1.0" encoding="UTF-8"?>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/schemas/vamsas.xsd b/schemas/vamsas.xsd

index 9f6ebea..e56a6c8 100755 (executable)
--- a/schemas/vamsas.xsd
+++ b/schemas/vamsas.xsd
@@ -1,6 +1,6 @@
  <?xml version="1.0" encoding="UTF-8"?>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/schemas/vamsasJvV1.xsd b/schemas/vamsasJvV1.xsd

index bd6b196..b6d79fa 100644 (file)
--- a/schemas/vamsasJvV1.xsd
+++ b/schemas/vamsasJvV1.xsd
@@ -1,6 +1,6 @@
  <?xml version="1.0" encoding="UTF-8"?>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/MCview/AppletPDBCanvas.java b/src/MCview/AppletPDBCanvas.java

index e5d8487..b470fd5 100644 (file)
--- a/src/MCview/AppletPDBCanvas.java
+++ b/src/MCview/AppletPDBCanvas.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/MCview/AppletPDBViewer.java b/src/MCview/AppletPDBViewer.java

index 8a1c430..2e7c77d 100644 (file)
--- a/src/MCview/AppletPDBViewer.java
+++ b/src/MCview/AppletPDBViewer.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/MCview/Atom.java b/src/MCview/Atom.java

index 6140ed0..5f40238 100755 (executable)
--- a/src/MCview/Atom.java
+++ b/src/MCview/Atom.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/MCview/Bond.java b/src/MCview/Bond.java

index fdfb3d0..f4afbd4 100755 (executable)
--- a/src/MCview/Bond.java
+++ b/src/MCview/Bond.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/MCview/MCMatrix.java b/src/MCview/MCMatrix.java

index d409312..e06fbf5 100755 (executable)
--- a/src/MCview/MCMatrix.java
+++ b/src/MCview/MCMatrix.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/MCview/PDBCanvas.java b/src/MCview/PDBCanvas.java

index 8c16aad..0f494a0 100644 (file)
--- a/src/MCview/PDBCanvas.java
+++ b/src/MCview/PDBCanvas.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/MCview/PDBChain.java b/src/MCview/PDBChain.java

index 823e02c..4703a3c 100755 (executable)
--- a/src/MCview/PDBChain.java
+++ b/src/MCview/PDBChain.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/MCview/PDBViewer.java b/src/MCview/PDBViewer.java

index 9d2a4c8..5b30043 100755 (executable)
--- a/src/MCview/PDBViewer.java
+++ b/src/MCview/PDBViewer.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/MCview/PDBfile.java b/src/MCview/PDBfile.java

index 0bc8f9b..9f65fef 100755 (executable)
--- a/src/MCview/PDBfile.java
+++ b/src/MCview/PDBfile.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/MCview/Residue.java b/src/MCview/Residue.java

index 2efbefe..3b8aa35 100755 (executable)
--- a/src/MCview/Residue.java
+++ b/src/MCview/Residue.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/MCview/Zsort.java b/src/MCview/Zsort.java

index 72e28b9..3a1377d 100755 (executable)
--- a/src/MCview/Zsort.java
+++ b/src/MCview/Zsort.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/castor.properties b/src/castor.properties

index f1176f8..593fd58 100644 (file)
--- a/src/castor.properties
+++ b/src/castor.properties
@@ -1,5 +1,5 @@
  ###############################################################################
-# Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+# Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
  # Copyright (C) 2014 The Jalview Authors
  # 
  # This file is part of Jalview.
diff --git a/src/ext/vamsas/IRegistry.java b/src/ext/vamsas/IRegistry.java

index 23ed3f4..d90e1e5 100755 (executable)
--- a/src/ext/vamsas/IRegistry.java
+++ b/src/ext/vamsas/IRegistry.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/ext/vamsas/IRegistryService.java b/src/ext/vamsas/IRegistryService.java

index b0ffe9e..b391db5 100755 (executable)
--- a/src/ext/vamsas/IRegistryService.java
+++ b/src/ext/vamsas/IRegistryService.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/ext/vamsas/IRegistryServiceLocator.java b/src/ext/vamsas/IRegistryServiceLocator.java

index d411513..55183d1 100755 (executable)
--- a/src/ext/vamsas/IRegistryServiceLocator.java
+++ b/src/ext/vamsas/IRegistryServiceLocator.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/ext/vamsas/Jpred.java b/src/ext/vamsas/Jpred.java

index 59dadcc..9e70809 100755 (executable)
--- a/src/ext/vamsas/Jpred.java
+++ b/src/ext/vamsas/Jpred.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/ext/vamsas/JpredService.java b/src/ext/vamsas/JpredService.java

index cc7a008..1b8ed83 100755 (executable)
--- a/src/ext/vamsas/JpredService.java
+++ b/src/ext/vamsas/JpredService.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/ext/vamsas/JpredServiceLocator.java b/src/ext/vamsas/JpredServiceLocator.java

index 7a23737..abd894d 100755 (executable)
--- a/src/ext/vamsas/JpredServiceLocator.java
+++ b/src/ext/vamsas/JpredServiceLocator.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/ext/vamsas/JpredSoapBindingStub.java b/src/ext/vamsas/JpredSoapBindingStub.java

index b35eabe..96d16d1 100755 (executable)
--- a/src/ext/vamsas/JpredSoapBindingStub.java
+++ b/src/ext/vamsas/JpredSoapBindingStub.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/ext/vamsas/MuscleWS.java b/src/ext/vamsas/MuscleWS.java

index ef9f1f7..4593f69 100755 (executable)
--- a/src/ext/vamsas/MuscleWS.java
+++ b/src/ext/vamsas/MuscleWS.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/ext/vamsas/MuscleWSService.java b/src/ext/vamsas/MuscleWSService.java

index 31bfd22..c9c742f 100755 (executable)
--- a/src/ext/vamsas/MuscleWSService.java
+++ b/src/ext/vamsas/MuscleWSService.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/ext/vamsas/MuscleWSServiceLocator.java b/src/ext/vamsas/MuscleWSServiceLocator.java

index a79dd27..8069083 100755 (executable)
--- a/src/ext/vamsas/MuscleWSServiceLocator.java
+++ b/src/ext/vamsas/MuscleWSServiceLocator.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/ext/vamsas/MuscleWSSoapBindingStub.java b/src/ext/vamsas/MuscleWSSoapBindingStub.java

index 7054d6f..3e09d7b 100755 (executable)
--- a/src/ext/vamsas/MuscleWSSoapBindingStub.java
+++ b/src/ext/vamsas/MuscleWSSoapBindingStub.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/ext/vamsas/RegistryServiceSoapBindingStub.java b/src/ext/vamsas/RegistryServiceSoapBindingStub.java

index b3fdb09..a94361f 100755 (executable)
--- a/src/ext/vamsas/RegistryServiceSoapBindingStub.java
+++ b/src/ext/vamsas/RegistryServiceSoapBindingStub.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/ext/vamsas/SeqSearchI.java b/src/ext/vamsas/SeqSearchI.java

index 63b3fec..214a6a1 100644 (file)
--- a/src/ext/vamsas/SeqSearchI.java
+++ b/src/ext/vamsas/SeqSearchI.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/ext/vamsas/SeqSearchServiceLocator.java b/src/ext/vamsas/SeqSearchServiceLocator.java

index a5708fe..a043911 100644 (file)
--- a/src/ext/vamsas/SeqSearchServiceLocator.java
+++ b/src/ext/vamsas/SeqSearchServiceLocator.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/ext/vamsas/SeqSearchServiceService.java b/src/ext/vamsas/SeqSearchServiceService.java

index e8d145d..6654900 100644 (file)
--- a/src/ext/vamsas/SeqSearchServiceService.java
+++ b/src/ext/vamsas/SeqSearchServiceService.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/ext/vamsas/SeqSearchServiceSoapBindingStub.java b/src/ext/vamsas/SeqSearchServiceSoapBindingStub.java

index fba1287..a934deb 100644 (file)
--- a/src/ext/vamsas/SeqSearchServiceSoapBindingStub.java
+++ b/src/ext/vamsas/SeqSearchServiceSoapBindingStub.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/ext/vamsas/ServiceHandle.java b/src/ext/vamsas/ServiceHandle.java

index bb27197..f75af7e 100755 (executable)
--- a/src/ext/vamsas/ServiceHandle.java
+++ b/src/ext/vamsas/ServiceHandle.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/ext/vamsas/ServiceHandles.java b/src/ext/vamsas/ServiceHandles.java

index 250f8bc..b0dc622 100755 (executable)
--- a/src/ext/vamsas/ServiceHandles.java
+++ b/src/ext/vamsas/ServiceHandles.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/analysis/AAFrequency.java b/src/jalview/analysis/AAFrequency.java

index d028ade..2c1a998 100755 (executable)
--- a/src/jalview/analysis/AAFrequency.java
+++ b/src/jalview/analysis/AAFrequency.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/analysis/AlignSeq.java b/src/jalview/analysis/AlignSeq.java

index 8147d76..3eae385 100755 (executable)
--- a/src/jalview/analysis/AlignSeq.java
+++ b/src/jalview/analysis/AlignSeq.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/analysis/AlignmentSorter.java b/src/jalview/analysis/AlignmentSorter.java

index cdb7dbe..8aafcc2 100755 (executable)
--- a/src/jalview/analysis/AlignmentSorter.java
+++ b/src/jalview/analysis/AlignmentSorter.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/analysis/Conservation.java b/src/jalview/analysis/Conservation.java

index f0dc860..e6f035f 100755 (executable)
--- a/src/jalview/analysis/Conservation.java
+++ b/src/jalview/analysis/Conservation.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/analysis/CrossRef.java b/src/jalview/analysis/CrossRef.java

index 8d52caf..bbf3f93 100644 (file)
--- a/src/jalview/analysis/CrossRef.java
+++ b/src/jalview/analysis/CrossRef.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/analysis/Dna.java b/src/jalview/analysis/Dna.java

index 3b41a8e..1ce22f2 100644 (file)
--- a/src/jalview/analysis/Dna.java
+++ b/src/jalview/analysis/Dna.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/analysis/Finder.java b/src/jalview/analysis/Finder.java

index 0494896..fcedbbb 100644 (file)
--- a/src/jalview/analysis/Finder.java
+++ b/src/jalview/analysis/Finder.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/analysis/Grouping.java b/src/jalview/analysis/Grouping.java

index 29b9323..82714ea 100644 (file)
--- a/src/jalview/analysis/Grouping.java
+++ b/src/jalview/analysis/Grouping.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/analysis/NJTree.java b/src/jalview/analysis/NJTree.java

index 4a5f762..541c8cc 100644 (file)
--- a/src/jalview/analysis/NJTree.java
+++ b/src/jalview/analysis/NJTree.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/analysis/PCA.java b/src/jalview/analysis/PCA.java

index 733e7f9..402e3a9 100755 (executable)
--- a/src/jalview/analysis/PCA.java
+++ b/src/jalview/analysis/PCA.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/analysis/ParseProperties.java b/src/jalview/analysis/ParseProperties.java

index b55542f..a4c1980 100644 (file)
--- a/src/jalview/analysis/ParseProperties.java
+++ b/src/jalview/analysis/ParseProperties.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/analysis/Rna.java b/src/jalview/analysis/Rna.java

index 9be62d2..ed2209a 100644 (file)
--- a/src/jalview/analysis/Rna.java
+++ b/src/jalview/analysis/Rna.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/analysis/SeqsetUtils.java b/src/jalview/analysis/SeqsetUtils.java

index 4fc54b8..f0427a8 100755 (executable)
--- a/src/jalview/analysis/SeqsetUtils.java
+++ b/src/jalview/analysis/SeqsetUtils.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/analysis/SequenceIdMatcher.java b/src/jalview/analysis/SequenceIdMatcher.java

index a502523..1285f6c 100755 (executable)
--- a/src/jalview/analysis/SequenceIdMatcher.java
+++ b/src/jalview/analysis/SequenceIdMatcher.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/analysis/StructureFrequency.java b/src/jalview/analysis/StructureFrequency.java

index 064f882..4e487ff 100644 (file)
--- a/src/jalview/analysis/StructureFrequency.java
+++ b/src/jalview/analysis/StructureFrequency.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/analysis/WUSSParseException.java b/src/jalview/analysis/WUSSParseException.java

index b7bf231..04c7518 100644 (file)
--- a/src/jalview/analysis/WUSSParseException.java
+++ b/src/jalview/analysis/WUSSParseException.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/api/AlignCalcManagerI.java b/src/jalview/api/AlignCalcManagerI.java

index 2641c96..fe83c55 100644 (file)
--- a/src/jalview/api/AlignCalcManagerI.java
+++ b/src/jalview/api/AlignCalcManagerI.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/api/AlignCalcWorkerI.java b/src/jalview/api/AlignCalcWorkerI.java

index c8dc96d..a627cae 100644 (file)
--- a/src/jalview/api/AlignCalcWorkerI.java
+++ b/src/jalview/api/AlignCalcWorkerI.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/api/AlignViewportI.java b/src/jalview/api/AlignViewportI.java

index 7463187..224ba0f 100644 (file)
--- a/src/jalview/api/AlignViewportI.java
+++ b/src/jalview/api/AlignViewportI.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/api/AlignmentViewPanel.java b/src/jalview/api/AlignmentViewPanel.java

index e3d8d66..5494814 100644 (file)
--- a/src/jalview/api/AlignmentViewPanel.java
+++ b/src/jalview/api/AlignmentViewPanel.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/api/FeatureRenderer.java b/src/jalview/api/FeatureRenderer.java

index d46d684..0577eb5 100644 (file)
--- a/src/jalview/api/FeatureRenderer.java
+++ b/src/jalview/api/FeatureRenderer.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/api/OOMHandlerI.java b/src/jalview/api/OOMHandlerI.java

index 0c4dda8..81b8872 100644 (file)
--- a/src/jalview/api/OOMHandlerI.java
+++ b/src/jalview/api/OOMHandlerI.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/api/RotatableCanvasI.java b/src/jalview/api/RotatableCanvasI.java

index f00ffa4..2fd468f 100644 (file)
--- a/src/jalview/api/RotatableCanvasI.java
+++ b/src/jalview/api/RotatableCanvasI.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/api/SequenceRenderer.java b/src/jalview/api/SequenceRenderer.java

index 7f47848..f888e7e 100644 (file)
--- a/src/jalview/api/SequenceRenderer.java
+++ b/src/jalview/api/SequenceRenderer.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/api/SequenceStructureBinding.java b/src/jalview/api/SequenceStructureBinding.java

index 99be87a..9f24ae9 100644 (file)
--- a/src/jalview/api/SequenceStructureBinding.java
+++ b/src/jalview/api/SequenceStructureBinding.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/api/StructureSelectionManagerProvider.java b/src/jalview/api/StructureSelectionManagerProvider.java

index c287142..b186979 100644 (file)
--- a/src/jalview/api/StructureSelectionManagerProvider.java
+++ b/src/jalview/api/StructureSelectionManagerProvider.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/appletgui/APopupMenu.java b/src/jalview/appletgui/APopupMenu.java

index 15d3b5d..bf17fb0 100644 (file)
--- a/src/jalview/appletgui/APopupMenu.java
+++ b/src/jalview/appletgui/APopupMenu.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/appletgui/AlignFrame.java b/src/jalview/appletgui/AlignFrame.java

index 48c08e2..16602c8 100644 (file)
--- a/src/jalview/appletgui/AlignFrame.java
+++ b/src/jalview/appletgui/AlignFrame.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/appletgui/AlignViewport.java b/src/jalview/appletgui/AlignViewport.java

index 42aae94..3afa1f5 100644 (file)
--- a/src/jalview/appletgui/AlignViewport.java
+++ b/src/jalview/appletgui/AlignViewport.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/appletgui/AlignmentPanel.java b/src/jalview/appletgui/AlignmentPanel.java

index 3214e70..98f44c6 100644 (file)
--- a/src/jalview/appletgui/AlignmentPanel.java
+++ b/src/jalview/appletgui/AlignmentPanel.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/appletgui/AnnotationColourChooser.java b/src/jalview/appletgui/AnnotationColourChooser.java

index 99ddc50..3e7a3fd 100644 (file)
--- a/src/jalview/appletgui/AnnotationColourChooser.java
+++ b/src/jalview/appletgui/AnnotationColourChooser.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/appletgui/AnnotationLabels.java b/src/jalview/appletgui/AnnotationLabels.java

index 5900b67..2786a08 100755 (executable)
--- a/src/jalview/appletgui/AnnotationLabels.java
+++ b/src/jalview/appletgui/AnnotationLabels.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/appletgui/AnnotationPanel.java b/src/jalview/appletgui/AnnotationPanel.java

index a343bcf..4a5fc8b 100755 (executable)
--- a/src/jalview/appletgui/AnnotationPanel.java
+++ b/src/jalview/appletgui/AnnotationPanel.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/appletgui/AppletJmol.java b/src/jalview/appletgui/AppletJmol.java

index b88bb94..44ab47b 100644 (file)
--- a/src/jalview/appletgui/AppletJmol.java
+++ b/src/jalview/appletgui/AppletJmol.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/appletgui/AppletJmolBinding.java b/src/jalview/appletgui/AppletJmolBinding.java

index 923f3b2..a41c96e 100644 (file)
--- a/src/jalview/appletgui/AppletJmolBinding.java
+++ b/src/jalview/appletgui/AppletJmolBinding.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/appletgui/CutAndPasteTransfer.java b/src/jalview/appletgui/CutAndPasteTransfer.java

index ff05547..b358273 100644 (file)
--- a/src/jalview/appletgui/CutAndPasteTransfer.java
+++ b/src/jalview/appletgui/CutAndPasteTransfer.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/appletgui/EditNameDialog.java b/src/jalview/appletgui/EditNameDialog.java

index 44aa229..61e87b2 100644 (file)
--- a/src/jalview/appletgui/EditNameDialog.java
+++ b/src/jalview/appletgui/EditNameDialog.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/appletgui/EmbmenuFrame.java b/src/jalview/appletgui/EmbmenuFrame.java

index 9d893d6..ade4a7d 100644 (file)
--- a/src/jalview/appletgui/EmbmenuFrame.java
+++ b/src/jalview/appletgui/EmbmenuFrame.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/appletgui/ExtJmol.java b/src/jalview/appletgui/ExtJmol.java

index ae6b5ab..03fde95 100644 (file)
--- a/src/jalview/appletgui/ExtJmol.java
+++ b/src/jalview/appletgui/ExtJmol.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/appletgui/FeatureColourChooser.java b/src/jalview/appletgui/FeatureColourChooser.java

index 66929d4..7c9caa1 100644 (file)
--- a/src/jalview/appletgui/FeatureColourChooser.java
+++ b/src/jalview/appletgui/FeatureColourChooser.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/appletgui/FeatureRenderer.java b/src/jalview/appletgui/FeatureRenderer.java

index 0478a76..1da360c 100644 (file)
--- a/src/jalview/appletgui/FeatureRenderer.java
+++ b/src/jalview/appletgui/FeatureRenderer.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/appletgui/FeatureSettings.java b/src/jalview/appletgui/FeatureSettings.java

index 004125d..378289a 100755 (executable)
--- a/src/jalview/appletgui/FeatureSettings.java
+++ b/src/jalview/appletgui/FeatureSettings.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/appletgui/Finder.java b/src/jalview/appletgui/Finder.java

index b27dfc5..8fe4d5d 100644 (file)
--- a/src/jalview/appletgui/Finder.java
+++ b/src/jalview/appletgui/Finder.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/appletgui/FontChooser.java b/src/jalview/appletgui/FontChooser.java

index a9fee20..1153bc4 100644 (file)
--- a/src/jalview/appletgui/FontChooser.java
+++ b/src/jalview/appletgui/FontChooser.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/appletgui/IdCanvas.java b/src/jalview/appletgui/IdCanvas.java

index aa3a578..4c4c2f7 100755 (executable)
--- a/src/jalview/appletgui/IdCanvas.java
+++ b/src/jalview/appletgui/IdCanvas.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/appletgui/IdPanel.java b/src/jalview/appletgui/IdPanel.java

index e427f42..9bf0128 100755 (executable)
--- a/src/jalview/appletgui/IdPanel.java
+++ b/src/jalview/appletgui/IdPanel.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/appletgui/IdwidthAdjuster.java b/src/jalview/appletgui/IdwidthAdjuster.java

index dc3fdba..f12b737 100755 (executable)
--- a/src/jalview/appletgui/IdwidthAdjuster.java
+++ b/src/jalview/appletgui/IdwidthAdjuster.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/appletgui/JVDialog.java b/src/jalview/appletgui/JVDialog.java

index 60df71d..4e002e8 100644 (file)
--- a/src/jalview/appletgui/JVDialog.java
+++ b/src/jalview/appletgui/JVDialog.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/appletgui/OverviewPanel.java b/src/jalview/appletgui/OverviewPanel.java

index 954f777..3da5a41 100755 (executable)
--- a/src/jalview/appletgui/OverviewPanel.java
+++ b/src/jalview/appletgui/OverviewPanel.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/appletgui/PCAPanel.java b/src/jalview/appletgui/PCAPanel.java

index f592404..f3523cb 100644 (file)
--- a/src/jalview/appletgui/PCAPanel.java
+++ b/src/jalview/appletgui/PCAPanel.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/appletgui/PaintRefresher.java b/src/jalview/appletgui/PaintRefresher.java

index e2f9756..2213629 100755 (executable)
--- a/src/jalview/appletgui/PaintRefresher.java
+++ b/src/jalview/appletgui/PaintRefresher.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/appletgui/PairwiseAlignPanel.java b/src/jalview/appletgui/PairwiseAlignPanel.java

index 589a664..b190bba 100644 (file)
--- a/src/jalview/appletgui/PairwiseAlignPanel.java
+++ b/src/jalview/appletgui/PairwiseAlignPanel.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/appletgui/RedundancyPanel.java b/src/jalview/appletgui/RedundancyPanel.java

index 3d7c80f..a889b89 100644 (file)
--- a/src/jalview/appletgui/RedundancyPanel.java
+++ b/src/jalview/appletgui/RedundancyPanel.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/appletgui/RotatableCanvas.java b/src/jalview/appletgui/RotatableCanvas.java

index 9ab487b..0aed4f3 100755 (executable)
--- a/src/jalview/appletgui/RotatableCanvas.java
+++ b/src/jalview/appletgui/RotatableCanvas.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/appletgui/ScalePanel.java b/src/jalview/appletgui/ScalePanel.java

index 58f4d69..2c70e82 100755 (executable)
--- a/src/jalview/appletgui/ScalePanel.java
+++ b/src/jalview/appletgui/ScalePanel.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/appletgui/SeqCanvas.java b/src/jalview/appletgui/SeqCanvas.java

index 34ef556..903c694 100755 (executable)
--- a/src/jalview/appletgui/SeqCanvas.java
+++ b/src/jalview/appletgui/SeqCanvas.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/appletgui/SeqPanel.java b/src/jalview/appletgui/SeqPanel.java

index 9e2c86f..71e9f4e 100644 (file)
--- a/src/jalview/appletgui/SeqPanel.java
+++ b/src/jalview/appletgui/SeqPanel.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/appletgui/SequenceRenderer.java b/src/jalview/appletgui/SequenceRenderer.java

index aec564b..0ba8864 100755 (executable)
--- a/src/jalview/appletgui/SequenceRenderer.java
+++ b/src/jalview/appletgui/SequenceRenderer.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/appletgui/SliderPanel.java b/src/jalview/appletgui/SliderPanel.java

index fc33c42..31027fa 100644 (file)
--- a/src/jalview/appletgui/SliderPanel.java
+++ b/src/jalview/appletgui/SliderPanel.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/appletgui/Tooltip.java b/src/jalview/appletgui/Tooltip.java

index 37066a5..10cb6b8 100755 (executable)
--- a/src/jalview/appletgui/Tooltip.java
+++ b/src/jalview/appletgui/Tooltip.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/appletgui/TreeCanvas.java b/src/jalview/appletgui/TreeCanvas.java

index a2626e7..a50abfa 100755 (executable)
--- a/src/jalview/appletgui/TreeCanvas.java
+++ b/src/jalview/appletgui/TreeCanvas.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/appletgui/TreePanel.java b/src/jalview/appletgui/TreePanel.java

index ee070a9..4ce6820 100644 (file)
--- a/src/jalview/appletgui/TreePanel.java
+++ b/src/jalview/appletgui/TreePanel.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/appletgui/UserDefinedColours.java b/src/jalview/appletgui/UserDefinedColours.java

index 1cf12f5..dc82546 100644 (file)
--- a/src/jalview/appletgui/UserDefinedColours.java
+++ b/src/jalview/appletgui/UserDefinedColours.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/bin/Cache.java b/src/jalview/bin/Cache.java

index a395093..d791cb6 100755 (executable)
--- a/src/jalview/bin/Cache.java
+++ b/src/jalview/bin/Cache.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/bin/Jalview.java b/src/jalview/bin/Jalview.java

index dfcd807..ef16e55 100755 (executable)
--- a/src/jalview/bin/Jalview.java
+++ b/src/jalview/bin/Jalview.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/bin/JalviewLite.java b/src/jalview/bin/JalviewLite.java

index f242b5d..c9d08d4 100644 (file)
--- a/src/jalview/bin/JalviewLite.java
+++ b/src/jalview/bin/JalviewLite.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/bin/JalviewLiteURLRetrieve.java b/src/jalview/bin/JalviewLiteURLRetrieve.java

index 67f3b67..b3c7fb3 100644 (file)
--- a/src/jalview/bin/JalviewLiteURLRetrieve.java
+++ b/src/jalview/bin/JalviewLiteURLRetrieve.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/binding/Alignment.java b/src/jalview/binding/Alignment.java

index fb696e7..db2a59e 100644 (file)
--- a/src/jalview/binding/Alignment.java
+++ b/src/jalview/binding/Alignment.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/binding/Annotation.java b/src/jalview/binding/Annotation.java

index ef2071d..7e157b4 100644 (file)
--- a/src/jalview/binding/Annotation.java
+++ b/src/jalview/binding/Annotation.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/binding/AnnotationElement.java b/src/jalview/binding/AnnotationElement.java

index cdd0c11..a62e033 100644 (file)
--- a/src/jalview/binding/AnnotationElement.java
+++ b/src/jalview/binding/AnnotationElement.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/binding/Colour.java b/src/jalview/binding/Colour.java

index e0d75e6..e7e24d1 100644 (file)
--- a/src/jalview/binding/Colour.java
+++ b/src/jalview/binding/Colour.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/binding/Feature.java b/src/jalview/binding/Feature.java

index 28109e6..051e347 100644 (file)
--- a/src/jalview/binding/Feature.java
+++ b/src/jalview/binding/Feature.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/binding/FeatureSettings.java b/src/jalview/binding/FeatureSettings.java

index 7f2d750..36c7144 100644 (file)
--- a/src/jalview/binding/FeatureSettings.java
+++ b/src/jalview/binding/FeatureSettings.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/binding/Features.java b/src/jalview/binding/Features.java

index f8c1f18..bedcd67 100644 (file)
--- a/src/jalview/binding/Features.java
+++ b/src/jalview/binding/Features.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/binding/JGroup.java b/src/jalview/binding/JGroup.java

index 080b146..2ce86d4 100644 (file)
--- a/src/jalview/binding/JGroup.java
+++ b/src/jalview/binding/JGroup.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/binding/JSeq.java b/src/jalview/binding/JSeq.java

index 9b3dfc2..b0dda89 100644 (file)
--- a/src/jalview/binding/JSeq.java
+++ b/src/jalview/binding/JSeq.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/binding/JalviewModel.java b/src/jalview/binding/JalviewModel.java

index 21e8b36..53aa9f7 100644 (file)
--- a/src/jalview/binding/JalviewModel.java
+++ b/src/jalview/binding/JalviewModel.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/binding/JalviewModelSequence.java b/src/jalview/binding/JalviewModelSequence.java

index f8940d3..19de744 100644 (file)
--- a/src/jalview/binding/JalviewModelSequence.java
+++ b/src/jalview/binding/JalviewModelSequence.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/binding/JalviewUserColours.java b/src/jalview/binding/JalviewUserColours.java

index d25dd59..fa8930c 100644 (file)
--- a/src/jalview/binding/JalviewUserColours.java
+++ b/src/jalview/binding/JalviewUserColours.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/binding/Pdbentry.java b/src/jalview/binding/Pdbentry.java

index 6464563..2bfa217 100644 (file)
--- a/src/jalview/binding/Pdbentry.java
+++ b/src/jalview/binding/Pdbentry.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/binding/PdbentryItem.java b/src/jalview/binding/PdbentryItem.java

index 41edda3..40dfd1e 100644 (file)
--- a/src/jalview/binding/PdbentryItem.java
+++ b/src/jalview/binding/PdbentryItem.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/binding/Pdbids.java b/src/jalview/binding/Pdbids.java

index d848fa3..493ac17 100644 (file)
--- a/src/jalview/binding/Pdbids.java
+++ b/src/jalview/binding/Pdbids.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/binding/Property.java b/src/jalview/binding/Property.java

index 3a02d27..e0b4b42 100644 (file)
--- a/src/jalview/binding/Property.java
+++ b/src/jalview/binding/Property.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/binding/Sequence.java b/src/jalview/binding/Sequence.java

index a7aaf4b..6451349 100644 (file)
--- a/src/jalview/binding/Sequence.java
+++ b/src/jalview/binding/Sequence.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/binding/SequenceSet.java b/src/jalview/binding/SequenceSet.java

index 611d49d..6d9f491 100644 (file)
--- a/src/jalview/binding/SequenceSet.java
+++ b/src/jalview/binding/SequenceSet.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/binding/SequenceType.java b/src/jalview/binding/SequenceType.java

index c653e30..434f4a4 100644 (file)
--- a/src/jalview/binding/SequenceType.java
+++ b/src/jalview/binding/SequenceType.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/binding/Setting.java b/src/jalview/binding/Setting.java

index c01fc35..6077f07 100644 (file)
--- a/src/jalview/binding/Setting.java
+++ b/src/jalview/binding/Setting.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/binding/Tree.java b/src/jalview/binding/Tree.java

index a1cbf24..5b5d8bf 100644 (file)
--- a/src/jalview/binding/Tree.java
+++ b/src/jalview/binding/Tree.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/binding/UserColourScheme.java b/src/jalview/binding/UserColourScheme.java

index be41f1a..1fba138 100644 (file)
--- a/src/jalview/binding/UserColourScheme.java
+++ b/src/jalview/binding/UserColourScheme.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/binding/UserColours.java b/src/jalview/binding/UserColours.java

index 411c6be..eee55a8 100644 (file)
--- a/src/jalview/binding/UserColours.java
+++ b/src/jalview/binding/UserColours.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/binding/VAMSAS.java b/src/jalview/binding/VAMSAS.java

index ca813a1..9df4f87 100644 (file)
--- a/src/jalview/binding/VAMSAS.java
+++ b/src/jalview/binding/VAMSAS.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/binding/VamsasModel.java b/src/jalview/binding/VamsasModel.java

index 18ad533..d8f9d64 100644 (file)
--- a/src/jalview/binding/VamsasModel.java
+++ b/src/jalview/binding/VamsasModel.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/binding/Viewport.java b/src/jalview/binding/Viewport.java

index 9a78ced..ab4d1e4 100644 (file)
--- a/src/jalview/binding/Viewport.java
+++ b/src/jalview/binding/Viewport.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/commands/ChangeCaseCommand.java b/src/jalview/commands/ChangeCaseCommand.java

index 138628a..8d60e6d 100644 (file)
--- a/src/jalview/commands/ChangeCaseCommand.java
+++ b/src/jalview/commands/ChangeCaseCommand.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/commands/CommandI.java b/src/jalview/commands/CommandI.java

index d35f290..b3353d1 100644 (file)
--- a/src/jalview/commands/CommandI.java
+++ b/src/jalview/commands/CommandI.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/commands/EditCommand.java b/src/jalview/commands/EditCommand.java

index ba66e82..c18b98c 100644 (file)
--- a/src/jalview/commands/EditCommand.java
+++ b/src/jalview/commands/EditCommand.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/commands/OrderCommand.java b/src/jalview/commands/OrderCommand.java

index 316d6ee..fbfb9ed 100644 (file)
--- a/src/jalview/commands/OrderCommand.java
+++ b/src/jalview/commands/OrderCommand.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/commands/RemoveGapColCommand.java b/src/jalview/commands/RemoveGapColCommand.java

index d67df61..d9785c4 100644 (file)
--- a/src/jalview/commands/RemoveGapColCommand.java
+++ b/src/jalview/commands/RemoveGapColCommand.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/commands/RemoveGapsCommand.java b/src/jalview/commands/RemoveGapsCommand.java

index c97d43a..b78409e 100644 (file)
--- a/src/jalview/commands/RemoveGapsCommand.java
+++ b/src/jalview/commands/RemoveGapsCommand.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/commands/SlideSequencesCommand.java b/src/jalview/commands/SlideSequencesCommand.java

index 5bdecc8..3dbc0e7 100644 (file)
--- a/src/jalview/commands/SlideSequencesCommand.java
+++ b/src/jalview/commands/SlideSequencesCommand.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/commands/TrimRegionCommand.java b/src/jalview/commands/TrimRegionCommand.java

index f98da94..cb60f4e 100644 (file)
--- a/src/jalview/commands/TrimRegionCommand.java
+++ b/src/jalview/commands/TrimRegionCommand.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/datamodel/AlignedCodonFrame.java b/src/jalview/datamodel/AlignedCodonFrame.java

index d974eb2..313c9bb 100644 (file)
--- a/src/jalview/datamodel/AlignedCodonFrame.java
+++ b/src/jalview/datamodel/AlignedCodonFrame.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/datamodel/Alignment.java b/src/jalview/datamodel/Alignment.java

index 5d97fe3..7f035b4 100755 (executable)
--- a/src/jalview/datamodel/Alignment.java
+++ b/src/jalview/datamodel/Alignment.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/datamodel/AlignmentAnnotation.java b/src/jalview/datamodel/AlignmentAnnotation.java

index e39c0b7..0fcf43d 100755 (executable)
--- a/src/jalview/datamodel/AlignmentAnnotation.java
+++ b/src/jalview/datamodel/AlignmentAnnotation.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
@@ -317,7 +317,7 @@ public class AlignmentAnnotation
                  // annotations[i].displayCharacter.charAt(0)==annotations[i].secondaryStructure
                  firstChar != ' '
                  && firstChar != '$'
-                && firstChar != 'µ' // JBPNote should explicitly express as unicode number to avoid source code translation problems
+                && firstChar != '�' // JBPNote should explicitly express as unicode number to avoid source code translation problems
                  && firstChar != '('
                  && firstChar != '['
                  && firstChar != '>'
diff --git a/src/jalview/datamodel/AlignmentI.java b/src/jalview/datamodel/AlignmentI.java

index 975f9fa..68903bb 100755 (executable)
--- a/src/jalview/datamodel/AlignmentI.java
+++ b/src/jalview/datamodel/AlignmentI.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/datamodel/AlignmentOrder.java b/src/jalview/datamodel/AlignmentOrder.java

index a230717..3be762c 100755 (executable)
--- a/src/jalview/datamodel/AlignmentOrder.java
+++ b/src/jalview/datamodel/AlignmentOrder.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/datamodel/AlignmentView.java b/src/jalview/datamodel/AlignmentView.java

index c5019d1..0f72569 100644 (file)
--- a/src/jalview/datamodel/AlignmentView.java
+++ b/src/jalview/datamodel/AlignmentView.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/datamodel/AnnotatedCollectionI.java b/src/jalview/datamodel/AnnotatedCollectionI.java

index 7baf5f5..cdd8843 100644 (file)
--- a/src/jalview/datamodel/AnnotatedCollectionI.java
+++ b/src/jalview/datamodel/AnnotatedCollectionI.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/datamodel/Annotation.java b/src/jalview/datamodel/Annotation.java

index aa933b7..b5b3813 100755 (executable)
--- a/src/jalview/datamodel/Annotation.java
+++ b/src/jalview/datamodel/Annotation.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/datamodel/BinaryNode.java b/src/jalview/datamodel/BinaryNode.java

index 47cd108..fc5caed 100755 (executable)
--- a/src/jalview/datamodel/BinaryNode.java
+++ b/src/jalview/datamodel/BinaryNode.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/datamodel/BinarySequence.java b/src/jalview/datamodel/BinarySequence.java

index 041ed44..10013cf 100755 (executable)
--- a/src/jalview/datamodel/BinarySequence.java
+++ b/src/jalview/datamodel/BinarySequence.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/datamodel/CigarArray.java b/src/jalview/datamodel/CigarArray.java

index 8315166..db5a520 100644 (file)
--- a/src/jalview/datamodel/CigarArray.java
+++ b/src/jalview/datamodel/CigarArray.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/datamodel/CigarBase.java b/src/jalview/datamodel/CigarBase.java

index 38ebdb1..3702492 100644 (file)
--- a/src/jalview/datamodel/CigarBase.java
+++ b/src/jalview/datamodel/CigarBase.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/datamodel/CigarCigar.java b/src/jalview/datamodel/CigarCigar.java

index 1a79b17..21c4412 100644 (file)
--- a/src/jalview/datamodel/CigarCigar.java
+++ b/src/jalview/datamodel/CigarCigar.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/datamodel/CigarSimple.java b/src/jalview/datamodel/CigarSimple.java

index 0b422d8..06533d1 100644 (file)
--- a/src/jalview/datamodel/CigarSimple.java
+++ b/src/jalview/datamodel/CigarSimple.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/datamodel/ColumnSelection.java b/src/jalview/datamodel/ColumnSelection.java

index 5518588..0655660 100644 (file)
--- a/src/jalview/datamodel/ColumnSelection.java
+++ b/src/jalview/datamodel/ColumnSelection.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/datamodel/DBRefEntry.java b/src/jalview/datamodel/DBRefEntry.java

index 0039dd5..8ba2888 100755 (executable)
--- a/src/jalview/datamodel/DBRefEntry.java
+++ b/src/jalview/datamodel/DBRefEntry.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/datamodel/DBRefSource.java b/src/jalview/datamodel/DBRefSource.java

index ceb11bf..2fd5b9e 100755 (executable)
--- a/src/jalview/datamodel/DBRefSource.java
+++ b/src/jalview/datamodel/DBRefSource.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/datamodel/FeatureProperties.java b/src/jalview/datamodel/FeatureProperties.java

index fbf0740..e5ad74a 100644 (file)
--- a/src/jalview/datamodel/FeatureProperties.java
+++ b/src/jalview/datamodel/FeatureProperties.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/datamodel/GraphLine.java b/src/jalview/datamodel/GraphLine.java

index ed4bd8d..6b3195e 100755 (executable)
--- a/src/jalview/datamodel/GraphLine.java
+++ b/src/jalview/datamodel/GraphLine.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/datamodel/HiddenSequences.java b/src/jalview/datamodel/HiddenSequences.java

index 9f08b7e..e652182 100755 (executable)
--- a/src/jalview/datamodel/HiddenSequences.java
+++ b/src/jalview/datamodel/HiddenSequences.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/datamodel/Mapping.java b/src/jalview/datamodel/Mapping.java

index 2e374c6..8966327 100644 (file)
--- a/src/jalview/datamodel/Mapping.java
+++ b/src/jalview/datamodel/Mapping.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/datamodel/NodeTransformI.java b/src/jalview/datamodel/NodeTransformI.java

index b5fc803..9e61faf 100644 (file)
--- a/src/jalview/datamodel/NodeTransformI.java
+++ b/src/jalview/datamodel/NodeTransformI.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/datamodel/PDBEntry.java b/src/jalview/datamodel/PDBEntry.java

index c41ea2e..fdd5920 100755 (executable)
--- a/src/jalview/datamodel/PDBEntry.java
+++ b/src/jalview/datamodel/PDBEntry.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/datamodel/Provenance.java b/src/jalview/datamodel/Provenance.java

index 5988fb7..179fe41 100755 (executable)
--- a/src/jalview/datamodel/Provenance.java
+++ b/src/jalview/datamodel/Provenance.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/datamodel/ProvenanceEntry.java b/src/jalview/datamodel/ProvenanceEntry.java

index b943285..b0f49da 100755 (executable)
--- a/src/jalview/datamodel/ProvenanceEntry.java
+++ b/src/jalview/datamodel/ProvenanceEntry.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/datamodel/SearchResults.java b/src/jalview/datamodel/SearchResults.java

index dd021cf..dcb1306 100755 (executable)
--- a/src/jalview/datamodel/SearchResults.java
+++ b/src/jalview/datamodel/SearchResults.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/datamodel/SeqCigar.java b/src/jalview/datamodel/SeqCigar.java

index 0ceefd5..5f69334 100644 (file)
--- a/src/jalview/datamodel/SeqCigar.java
+++ b/src/jalview/datamodel/SeqCigar.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/datamodel/Sequence.java b/src/jalview/datamodel/Sequence.java

index f2ebbdc..24c409a 100755 (executable)
--- a/src/jalview/datamodel/Sequence.java
+++ b/src/jalview/datamodel/Sequence.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/datamodel/SequenceCollectionI.java b/src/jalview/datamodel/SequenceCollectionI.java

index 73cf03f..61f3bb0 100644 (file)
--- a/src/jalview/datamodel/SequenceCollectionI.java
+++ b/src/jalview/datamodel/SequenceCollectionI.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/datamodel/SequenceFeature.java b/src/jalview/datamodel/SequenceFeature.java

index 24afbd3..ee21574 100755 (executable)
--- a/src/jalview/datamodel/SequenceFeature.java
+++ b/src/jalview/datamodel/SequenceFeature.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/datamodel/SequenceGroup.java b/src/jalview/datamodel/SequenceGroup.java

index a01c0a5..3b9e26a 100755 (executable)
--- a/src/jalview/datamodel/SequenceGroup.java
+++ b/src/jalview/datamodel/SequenceGroup.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/datamodel/SequenceI.java b/src/jalview/datamodel/SequenceI.java

index d8f75a4..dc52a1c 100755 (executable)
--- a/src/jalview/datamodel/SequenceI.java
+++ b/src/jalview/datamodel/SequenceI.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/datamodel/SequenceNode.java b/src/jalview/datamodel/SequenceNode.java

index d6770c0..f72382d 100755 (executable)
--- a/src/jalview/datamodel/SequenceNode.java
+++ b/src/jalview/datamodel/SequenceNode.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/datamodel/SequencePoint.java b/src/jalview/datamodel/SequencePoint.java

index d38da0f..6958784 100755 (executable)
--- a/src/jalview/datamodel/SequencePoint.java
+++ b/src/jalview/datamodel/SequencePoint.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/datamodel/UniprotEntry.java b/src/jalview/datamodel/UniprotEntry.java

index f21591a..38818a4 100755 (executable)
--- a/src/jalview/datamodel/UniprotEntry.java
+++ b/src/jalview/datamodel/UniprotEntry.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/datamodel/UniprotFile.java b/src/jalview/datamodel/UniprotFile.java

index f68ffc6..316fdd1 100755 (executable)
--- a/src/jalview/datamodel/UniprotFile.java
+++ b/src/jalview/datamodel/UniprotFile.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/datamodel/UniprotProteinName.java b/src/jalview/datamodel/UniprotProteinName.java

index cb21789..c4dcb93 100755 (executable)
--- a/src/jalview/datamodel/UniprotProteinName.java
+++ b/src/jalview/datamodel/UniprotProteinName.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/datamodel/UniprotSequence.java b/src/jalview/datamodel/UniprotSequence.java

index a5112c6..4566da7 100755 (executable)
--- a/src/jalview/datamodel/UniprotSequence.java
+++ b/src/jalview/datamodel/UniprotSequence.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/datamodel/xdb/embl/BasePosition.java b/src/jalview/datamodel/xdb/embl/BasePosition.java

index 53d4341..9718397 100644 (file)
--- a/src/jalview/datamodel/xdb/embl/BasePosition.java
+++ b/src/jalview/datamodel/xdb/embl/BasePosition.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/datamodel/xdb/embl/EmblEntry.java b/src/jalview/datamodel/xdb/embl/EmblEntry.java

index 0445046..bd46b95 100644 (file)
--- a/src/jalview/datamodel/xdb/embl/EmblEntry.java
+++ b/src/jalview/datamodel/xdb/embl/EmblEntry.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/datamodel/xdb/embl/EmblError.java b/src/jalview/datamodel/xdb/embl/EmblError.java

index c7a59d8..ed458b9 100644 (file)
--- a/src/jalview/datamodel/xdb/embl/EmblError.java
+++ b/src/jalview/datamodel/xdb/embl/EmblError.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/datamodel/xdb/embl/EmblFeature.java b/src/jalview/datamodel/xdb/embl/EmblFeature.java

index c920f7b..1b83245 100644 (file)
--- a/src/jalview/datamodel/xdb/embl/EmblFeature.java
+++ b/src/jalview/datamodel/xdb/embl/EmblFeature.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/datamodel/xdb/embl/EmblFeatureLocElement.java b/src/jalview/datamodel/xdb/embl/EmblFeatureLocElement.java

index c5aad07..f89aa2e 100644 (file)
--- a/src/jalview/datamodel/xdb/embl/EmblFeatureLocElement.java
+++ b/src/jalview/datamodel/xdb/embl/EmblFeatureLocElement.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/datamodel/xdb/embl/EmblFeatureLocations.java b/src/jalview/datamodel/xdb/embl/EmblFeatureLocations.java

index fd4de3c..ef09c1b 100644 (file)
--- a/src/jalview/datamodel/xdb/embl/EmblFeatureLocations.java
+++ b/src/jalview/datamodel/xdb/embl/EmblFeatureLocations.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/datamodel/xdb/embl/EmblFile.java b/src/jalview/datamodel/xdb/embl/EmblFile.java

index 7e39a51..f724192 100644 (file)
--- a/src/jalview/datamodel/xdb/embl/EmblFile.java
+++ b/src/jalview/datamodel/xdb/embl/EmblFile.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/datamodel/xdb/embl/EmblSequence.java b/src/jalview/datamodel/xdb/embl/EmblSequence.java

index a997066..efc84f4 100644 (file)
--- a/src/jalview/datamodel/xdb/embl/EmblSequence.java
+++ b/src/jalview/datamodel/xdb/embl/EmblSequence.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/datamodel/xdb/embl/Qualifier.java b/src/jalview/datamodel/xdb/embl/Qualifier.java

index c60c52a..4f06eae 100644 (file)
--- a/src/jalview/datamodel/xdb/embl/Qualifier.java
+++ b/src/jalview/datamodel/xdb/embl/Qualifier.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ext/jmol/JalviewJmolBinding.java b/src/jalview/ext/jmol/JalviewJmolBinding.java

index 8ee2296..7224737 100644 (file)
--- a/src/jalview/ext/jmol/JalviewJmolBinding.java
+++ b/src/jalview/ext/jmol/JalviewJmolBinding.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ext/jmol/JmolCommands.java b/src/jalview/ext/jmol/JmolCommands.java

index 17a622d..21fbb98 100644 (file)
--- a/src/jalview/ext/jmol/JmolCommands.java
+++ b/src/jalview/ext/jmol/JmolCommands.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ext/varna/JalviewVarnaBinding.java b/src/jalview/ext/varna/JalviewVarnaBinding.java

index c0b6bec..50c9c97 100644 (file)
--- a/src/jalview/ext/varna/JalviewVarnaBinding.java
+++ b/src/jalview/ext/varna/JalviewVarnaBinding.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ext/varna/VarnaCommands.java b/src/jalview/ext/varna/VarnaCommands.java

index 94899ca..bd5c547 100644 (file)
--- a/src/jalview/ext/varna/VarnaCommands.java
+++ b/src/jalview/ext/varna/VarnaCommands.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/gui/AlignFrame.java b/src/jalview/gui/AlignFrame.java

index d992233..664f92d 100644 (file)
--- a/src/jalview/gui/AlignFrame.java
+++ b/src/jalview/gui/AlignFrame.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/gui/AlignViewport.java b/src/jalview/gui/AlignViewport.java

index de8f310..f232e92 100644 (file)
--- a/src/jalview/gui/AlignViewport.java
+++ b/src/jalview/gui/AlignViewport.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/gui/AlignmentPanel.java b/src/jalview/gui/AlignmentPanel.java

index cad4339..c83e1d4 100644 (file)
--- a/src/jalview/gui/AlignmentPanel.java
+++ b/src/jalview/gui/AlignmentPanel.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/gui/AnnotationColourChooser.java b/src/jalview/gui/AnnotationColourChooser.java

index 60a0759..9afe54f 100644 (file)
--- a/src/jalview/gui/AnnotationColourChooser.java
+++ b/src/jalview/gui/AnnotationColourChooser.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/gui/AnnotationExporter.java b/src/jalview/gui/AnnotationExporter.java

index a199c95..ced0fef 100644 (file)
--- a/src/jalview/gui/AnnotationExporter.java
+++ b/src/jalview/gui/AnnotationExporter.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/gui/AnnotationLabels.java b/src/jalview/gui/AnnotationLabels.java

index 2178e37..0378753 100755 (executable)
--- a/src/jalview/gui/AnnotationLabels.java
+++ b/src/jalview/gui/AnnotationLabels.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/gui/AnnotationPanel.java b/src/jalview/gui/AnnotationPanel.java

index 128110b..b18501e 100755 (executable)
--- a/src/jalview/gui/AnnotationPanel.java
+++ b/src/jalview/gui/AnnotationPanel.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/gui/AppJmol.java b/src/jalview/gui/AppJmol.java

index bf32dff..1af0cb3 100644 (file)
--- a/src/jalview/gui/AppJmol.java
+++ b/src/jalview/gui/AppJmol.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/gui/AppJmolBinding.java b/src/jalview/gui/AppJmolBinding.java

index 2424f90..af40504 100644 (file)
--- a/src/jalview/gui/AppJmolBinding.java
+++ b/src/jalview/gui/AppJmolBinding.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/gui/AppVarna.java b/src/jalview/gui/AppVarna.java

index 1d05f29..21f809f 100644 (file)
--- a/src/jalview/gui/AppVarna.java
+++ b/src/jalview/gui/AppVarna.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/gui/AppVarnaBinding.java b/src/jalview/gui/AppVarnaBinding.java

index ad91c20..ce0f3df 100644 (file)
--- a/src/jalview/gui/AppVarnaBinding.java
+++ b/src/jalview/gui/AppVarnaBinding.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/gui/AssociatePdbFileWithSeq.java b/src/jalview/gui/AssociatePdbFileWithSeq.java

index 08cee2f..0c215c7 100644 (file)
--- a/src/jalview/gui/AssociatePdbFileWithSeq.java
+++ b/src/jalview/gui/AssociatePdbFileWithSeq.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/gui/BlogReader.java b/src/jalview/gui/BlogReader.java

index 566f1c7..3fd9569 100644 (file)
--- a/src/jalview/gui/BlogReader.java
+++ b/src/jalview/gui/BlogReader.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/gui/Console.java b/src/jalview/gui/Console.java

index 7552dc9..b3070e0 100644 (file)
--- a/src/jalview/gui/Console.java
+++ b/src/jalview/gui/Console.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/gui/CutAndPasteHtmlTransfer.java b/src/jalview/gui/CutAndPasteHtmlTransfer.java

index a2ebd0a..1326e41 100644 (file)
--- a/src/jalview/gui/CutAndPasteHtmlTransfer.java
+++ b/src/jalview/gui/CutAndPasteHtmlTransfer.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/gui/CutAndPasteTransfer.java b/src/jalview/gui/CutAndPasteTransfer.java

index c8901d3..5465d33 100644 (file)
--- a/src/jalview/gui/CutAndPasteTransfer.java
+++ b/src/jalview/gui/CutAndPasteTransfer.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/gui/DasSourceBrowser.java b/src/jalview/gui/DasSourceBrowser.java

index a875bf9..24e2a1f 100644 (file)
--- a/src/jalview/gui/DasSourceBrowser.java
+++ b/src/jalview/gui/DasSourceBrowser.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/gui/Desktop.java b/src/jalview/gui/Desktop.java

index daee60f..51b6ed4 100644 (file)
--- a/src/jalview/gui/Desktop.java
+++ b/src/jalview/gui/Desktop.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/gui/EPSOptions.java b/src/jalview/gui/EPSOptions.java

index 9cc1844..7d6dcef 100644 (file)
--- a/src/jalview/gui/EPSOptions.java
+++ b/src/jalview/gui/EPSOptions.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/gui/EditNameDialog.java b/src/jalview/gui/EditNameDialog.java

index 5e69ac7..0111563 100644 (file)
--- a/src/jalview/gui/EditNameDialog.java
+++ b/src/jalview/gui/EditNameDialog.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/gui/FeatureColourChooser.java b/src/jalview/gui/FeatureColourChooser.java

index 6b28937..8d9df0e 100644 (file)
--- a/src/jalview/gui/FeatureColourChooser.java
+++ b/src/jalview/gui/FeatureColourChooser.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/gui/FeatureRenderer.java b/src/jalview/gui/FeatureRenderer.java

index 970160e..28ecc86 100644 (file)
--- a/src/jalview/gui/FeatureRenderer.java
+++ b/src/jalview/gui/FeatureRenderer.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/gui/FeatureSettings.java b/src/jalview/gui/FeatureSettings.java

index 3787efa..daae5a5 100644 (file)
--- a/src/jalview/gui/FeatureSettings.java
+++ b/src/jalview/gui/FeatureSettings.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/gui/Finder.java b/src/jalview/gui/Finder.java

index 3161271..727e103 100755 (executable)
--- a/src/jalview/gui/Finder.java
+++ b/src/jalview/gui/Finder.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/gui/FontChooser.java b/src/jalview/gui/FontChooser.java

index ea84207..61a3ada 100755 (executable)
--- a/src/jalview/gui/FontChooser.java
+++ b/src/jalview/gui/FontChooser.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/gui/IProgressIndicator.java b/src/jalview/gui/IProgressIndicator.java

index a1e4b2e..83e266f 100644 (file)
--- a/src/jalview/gui/IProgressIndicator.java
+++ b/src/jalview/gui/IProgressIndicator.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/gui/IProgressIndicatorHandler.java b/src/jalview/gui/IProgressIndicatorHandler.java

index c288abd..252a562 100644 (file)
--- a/src/jalview/gui/IProgressIndicatorHandler.java
+++ b/src/jalview/gui/IProgressIndicatorHandler.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/gui/IdCanvas.java b/src/jalview/gui/IdCanvas.java

index 5216f0d..0b17733 100755 (executable)
--- a/src/jalview/gui/IdCanvas.java
+++ b/src/jalview/gui/IdCanvas.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/gui/IdPanel.java b/src/jalview/gui/IdPanel.java

index 2b87d21..766d583 100755 (executable)
--- a/src/jalview/gui/IdPanel.java
+++ b/src/jalview/gui/IdPanel.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/gui/IdwidthAdjuster.java b/src/jalview/gui/IdwidthAdjuster.java

index 632d4df..0aa302c 100755 (executable)
--- a/src/jalview/gui/IdwidthAdjuster.java
+++ b/src/jalview/gui/IdwidthAdjuster.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/gui/JDatabaseTree.java b/src/jalview/gui/JDatabaseTree.java

index b2bbdef..7343eab 100644 (file)
--- a/src/jalview/gui/JDatabaseTree.java
+++ b/src/jalview/gui/JDatabaseTree.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/gui/Jalview2XML.java b/src/jalview/gui/Jalview2XML.java

index dcf65b7..7a71d79 100644 (file)
--- a/src/jalview/gui/Jalview2XML.java
+++ b/src/jalview/gui/Jalview2XML.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/gui/Jalview2XML_V1.java b/src/jalview/gui/Jalview2XML_V1.java

index b470974..d4c8e3b 100755 (executable)
--- a/src/jalview/gui/Jalview2XML_V1.java
+++ b/src/jalview/gui/Jalview2XML_V1.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/gui/JalviewAppender.java b/src/jalview/gui/JalviewAppender.java

index eb86e58..51c76c0 100644 (file)
--- a/src/jalview/gui/JalviewAppender.java
+++ b/src/jalview/gui/JalviewAppender.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/gui/JalviewChangeSupport.java b/src/jalview/gui/JalviewChangeSupport.java

index d4c1bc1..1cd0abf 100644 (file)
--- a/src/jalview/gui/JalviewChangeSupport.java
+++ b/src/jalview/gui/JalviewChangeSupport.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/gui/JalviewDialog.java b/src/jalview/gui/JalviewDialog.java

index 3f58769..7340a86 100644 (file)
--- a/src/jalview/gui/JalviewDialog.java
+++ b/src/jalview/gui/JalviewDialog.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/gui/JvSwingUtils.java b/src/jalview/gui/JvSwingUtils.java

index 0e3ecd8..9bf29cd 100644 (file)
--- a/src/jalview/gui/JvSwingUtils.java
+++ b/src/jalview/gui/JvSwingUtils.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/gui/OOMWarning.java b/src/jalview/gui/OOMWarning.java

index 6ab5220..2beae9c 100644 (file)
--- a/src/jalview/gui/OOMWarning.java
+++ b/src/jalview/gui/OOMWarning.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/gui/OptsAndParamsPage.java b/src/jalview/gui/OptsAndParamsPage.java

index 5df0174..d072378 100644 (file)
--- a/src/jalview/gui/OptsAndParamsPage.java
+++ b/src/jalview/gui/OptsAndParamsPage.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/gui/OptsParametersContainerI.java b/src/jalview/gui/OptsParametersContainerI.java

index 2d3f59e..87e17eb 100644 (file)
--- a/src/jalview/gui/OptsParametersContainerI.java
+++ b/src/jalview/gui/OptsParametersContainerI.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/gui/OverviewPanel.java b/src/jalview/gui/OverviewPanel.java

index 0b11189..440804b 100755 (executable)
--- a/src/jalview/gui/OverviewPanel.java
+++ b/src/jalview/gui/OverviewPanel.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/gui/PCAPanel.java b/src/jalview/gui/PCAPanel.java

index 133c0ce..254f5fa 100644 (file)
--- a/src/jalview/gui/PCAPanel.java
+++ b/src/jalview/gui/PCAPanel.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/gui/PaintRefresher.java b/src/jalview/gui/PaintRefresher.java

index 01a5f57..3a07e65 100755 (executable)
--- a/src/jalview/gui/PaintRefresher.java
+++ b/src/jalview/gui/PaintRefresher.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/gui/PairwiseAlignPanel.java b/src/jalview/gui/PairwiseAlignPanel.java

index e2f96f1..f237e72 100755 (executable)
--- a/src/jalview/gui/PairwiseAlignPanel.java
+++ b/src/jalview/gui/PairwiseAlignPanel.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/gui/PopupMenu.java b/src/jalview/gui/PopupMenu.java

index 742cd6b..6974d96 100644 (file)
--- a/src/jalview/gui/PopupMenu.java
+++ b/src/jalview/gui/PopupMenu.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/gui/Preferences.java b/src/jalview/gui/Preferences.java

index 51138f2..3a0489a 100755 (executable)
--- a/src/jalview/gui/Preferences.java
+++ b/src/jalview/gui/Preferences.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/gui/PromptUserConfig.java b/src/jalview/gui/PromptUserConfig.java

index 95b3fd4..89d80e5 100644 (file)
--- a/src/jalview/gui/PromptUserConfig.java
+++ b/src/jalview/gui/PromptUserConfig.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/gui/RedundancyPanel.java b/src/jalview/gui/RedundancyPanel.java

index 59ee1e7..8ba1feb 100755 (executable)
--- a/src/jalview/gui/RedundancyPanel.java
+++ b/src/jalview/gui/RedundancyPanel.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/gui/RestInputParamEditDialog.java b/src/jalview/gui/RestInputParamEditDialog.java

index 497bbe2..8359f0a 100644 (file)
--- a/src/jalview/gui/RestInputParamEditDialog.java
+++ b/src/jalview/gui/RestInputParamEditDialog.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/gui/RestServiceEditorPane.java b/src/jalview/gui/RestServiceEditorPane.java

index cfdea05..6f099e3 100644 (file)
--- a/src/jalview/gui/RestServiceEditorPane.java
+++ b/src/jalview/gui/RestServiceEditorPane.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/gui/RotatableCanvas.java b/src/jalview/gui/RotatableCanvas.java

index 7f31eb1..263f0dc 100755 (executable)
--- a/src/jalview/gui/RotatableCanvas.java
+++ b/src/jalview/gui/RotatableCanvas.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/gui/ScalePanel.java b/src/jalview/gui/ScalePanel.java

index 62f767d..e7151dd 100755 (executable)
--- a/src/jalview/gui/ScalePanel.java
+++ b/src/jalview/gui/ScalePanel.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/gui/ScriptWindow.java b/src/jalview/gui/ScriptWindow.java

index e9ffd6e..faf1567 100644 (file)
--- a/src/jalview/gui/ScriptWindow.java
+++ b/src/jalview/gui/ScriptWindow.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/gui/SeqCanvas.java b/src/jalview/gui/SeqCanvas.java

index e7d9030..690c048 100755 (executable)
--- a/src/jalview/gui/SeqCanvas.java
+++ b/src/jalview/gui/SeqCanvas.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/gui/SeqPanel.java b/src/jalview/gui/SeqPanel.java

index 904b856..f371879 100644 (file)
--- a/src/jalview/gui/SeqPanel.java
+++ b/src/jalview/gui/SeqPanel.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/gui/SequenceFetcher.java b/src/jalview/gui/SequenceFetcher.java

index 45d944d..a1a83ee 100755 (executable)
--- a/src/jalview/gui/SequenceFetcher.java
+++ b/src/jalview/gui/SequenceFetcher.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/gui/SequenceRenderer.java b/src/jalview/gui/SequenceRenderer.java

index 9ca3d83..691aa7e 100755 (executable)
--- a/src/jalview/gui/SequenceRenderer.java
+++ b/src/jalview/gui/SequenceRenderer.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/gui/SliderPanel.java b/src/jalview/gui/SliderPanel.java

index aa4aa64..424aabe 100755 (executable)
--- a/src/jalview/gui/SliderPanel.java
+++ b/src/jalview/gui/SliderPanel.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/gui/SplashScreen.java b/src/jalview/gui/SplashScreen.java

index 652aa75..653b1fd 100755 (executable)
--- a/src/jalview/gui/SplashScreen.java
+++ b/src/jalview/gui/SplashScreen.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/gui/TextColourChooser.java b/src/jalview/gui/TextColourChooser.java

index 2f9422a..a694fa2 100644 (file)
--- a/src/jalview/gui/TextColourChooser.java
+++ b/src/jalview/gui/TextColourChooser.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/gui/TreeCanvas.java b/src/jalview/gui/TreeCanvas.java

index 5bea550..81abf03 100755 (executable)
--- a/src/jalview/gui/TreeCanvas.java
+++ b/src/jalview/gui/TreeCanvas.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/gui/TreePanel.java b/src/jalview/gui/TreePanel.java

index 923d702..d50a11b 100755 (executable)
--- a/src/jalview/gui/TreePanel.java
+++ b/src/jalview/gui/TreePanel.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/gui/UserDefinedColours.java b/src/jalview/gui/UserDefinedColours.java

index e1ff5e0..df95a49 100755 (executable)
--- a/src/jalview/gui/UserDefinedColours.java
+++ b/src/jalview/gui/UserDefinedColours.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/gui/UserQuestionnaireCheck.java b/src/jalview/gui/UserQuestionnaireCheck.java

index cd102b6..8c8c283 100644 (file)
--- a/src/jalview/gui/UserQuestionnaireCheck.java
+++ b/src/jalview/gui/UserQuestionnaireCheck.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/gui/VamsasApplication.java b/src/jalview/gui/VamsasApplication.java

index 5ee7e36..5e078fd 100644 (file)
--- a/src/jalview/gui/VamsasApplication.java
+++ b/src/jalview/gui/VamsasApplication.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/gui/ViewSelectionMenu.java b/src/jalview/gui/ViewSelectionMenu.java

index b90f742..7cada03 100644 (file)
--- a/src/jalview/gui/ViewSelectionMenu.java
+++ b/src/jalview/gui/ViewSelectionMenu.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/gui/WebserviceInfo.java b/src/jalview/gui/WebserviceInfo.java

index 723746c..ca6650b 100644 (file)
--- a/src/jalview/gui/WebserviceInfo.java
+++ b/src/jalview/gui/WebserviceInfo.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/gui/WsJobParameters.java b/src/jalview/gui/WsJobParameters.java

index b905b63..30e4fbe 100644 (file)
--- a/src/jalview/gui/WsJobParameters.java
+++ b/src/jalview/gui/WsJobParameters.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/gui/WsParamSetManager.java b/src/jalview/gui/WsParamSetManager.java

index 5335b22..6d1dcb5 100644 (file)
--- a/src/jalview/gui/WsParamSetManager.java
+++ b/src/jalview/gui/WsParamSetManager.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/gui/WsPreferences.java b/src/jalview/gui/WsPreferences.java

index 59e6309..d4663a2 100644 (file)
--- a/src/jalview/gui/WsPreferences.java
+++ b/src/jalview/gui/WsPreferences.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/io/AMSAFile.java b/src/jalview/io/AMSAFile.java

index 31f9b21..c39675b 100644 (file)
--- a/src/jalview/io/AMSAFile.java
+++ b/src/jalview/io/AMSAFile.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/io/AlignFile.java b/src/jalview/io/AlignFile.java

index 87f7cfb..0b9a537 100755 (executable)
--- a/src/jalview/io/AlignFile.java
+++ b/src/jalview/io/AlignFile.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/io/AlignmentProperties.java b/src/jalview/io/AlignmentProperties.java

index 86fa6a0..4b428cd 100644 (file)
--- a/src/jalview/io/AlignmentProperties.java
+++ b/src/jalview/io/AlignmentProperties.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/io/AnnotationFile.java b/src/jalview/io/AnnotationFile.java

index 9a21fbb..82307a9 100755 (executable)
--- a/src/jalview/io/AnnotationFile.java
+++ b/src/jalview/io/AnnotationFile.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/io/AppletFormatAdapter.java b/src/jalview/io/AppletFormatAdapter.java

index 7168744..417daba 100755 (executable)
--- a/src/jalview/io/AppletFormatAdapter.java
+++ b/src/jalview/io/AppletFormatAdapter.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/io/BLCFile.java b/src/jalview/io/BLCFile.java

index 6ce0d61..4a07ac4 100755 (executable)
--- a/src/jalview/io/BLCFile.java
+++ b/src/jalview/io/BLCFile.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/io/ClansFile.java b/src/jalview/io/ClansFile.java

index b7bfacc..a06234e 100644 (file)
--- a/src/jalview/io/ClansFile.java
+++ b/src/jalview/io/ClansFile.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/io/ClustalFile.java b/src/jalview/io/ClustalFile.java

index b45e908..08d9992 100755 (executable)
--- a/src/jalview/io/ClustalFile.java
+++ b/src/jalview/io/ClustalFile.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/io/DBRefFile.java b/src/jalview/io/DBRefFile.java

index c29294a..fd81300 100644 (file)
--- a/src/jalview/io/DBRefFile.java
+++ b/src/jalview/io/DBRefFile.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/io/FastaFile.java b/src/jalview/io/FastaFile.java

index 8972a93..2db0ded 100755 (executable)
--- a/src/jalview/io/FastaFile.java
+++ b/src/jalview/io/FastaFile.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/io/FeaturesFile.java b/src/jalview/io/FeaturesFile.java

index 5737592..5ecf674 100755 (executable)
--- a/src/jalview/io/FeaturesFile.java
+++ b/src/jalview/io/FeaturesFile.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/io/FileLoader.java b/src/jalview/io/FileLoader.java

index 1994865..1659e2c 100755 (executable)
--- a/src/jalview/io/FileLoader.java
+++ b/src/jalview/io/FileLoader.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/io/FileParse.java b/src/jalview/io/FileParse.java

index b52fdfb..47583f0 100755 (executable)
--- a/src/jalview/io/FileParse.java
+++ b/src/jalview/io/FileParse.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/io/FormatAdapter.java b/src/jalview/io/FormatAdapter.java

index bb1608d..3d33fae 100755 (executable)
--- a/src/jalview/io/FormatAdapter.java
+++ b/src/jalview/io/FormatAdapter.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/io/HTMLOutput.java b/src/jalview/io/HTMLOutput.java

index 4b4dd93..28141e8 100755 (executable)
--- a/src/jalview/io/HTMLOutput.java
+++ b/src/jalview/io/HTMLOutput.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/io/IdentifyFile.java b/src/jalview/io/IdentifyFile.java

index 1a0db71..f80b3ca 100755 (executable)
--- a/src/jalview/io/IdentifyFile.java
+++ b/src/jalview/io/IdentifyFile.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/io/JPredFile.java b/src/jalview/io/JPredFile.java

index b0c4688..0a1c408 100755 (executable)
--- a/src/jalview/io/JPredFile.java
+++ b/src/jalview/io/JPredFile.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/io/JalviewFileChooser.java b/src/jalview/io/JalviewFileChooser.java

index a8aa8d4..34c1fdd 100755 (executable)
--- a/src/jalview/io/JalviewFileChooser.java
+++ b/src/jalview/io/JalviewFileChooser.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/io/JalviewFileFilter.java b/src/jalview/io/JalviewFileFilter.java

index 2f2499b..9bfc25a 100755 (executable)
--- a/src/jalview/io/JalviewFileFilter.java
+++ b/src/jalview/io/JalviewFileFilter.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/io/JalviewFileView.java b/src/jalview/io/JalviewFileView.java

index 03d7c59..6609f38 100755 (executable)
--- a/src/jalview/io/JalviewFileView.java
+++ b/src/jalview/io/JalviewFileView.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/io/JnetAnnotationMaker.java b/src/jalview/io/JnetAnnotationMaker.java

index 8ffcaf7..f6bf105 100755 (executable)
--- a/src/jalview/io/JnetAnnotationMaker.java
+++ b/src/jalview/io/JnetAnnotationMaker.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/io/MSFfile.java b/src/jalview/io/MSFfile.java

index 9b6fc89..64e098d 100755 (executable)
--- a/src/jalview/io/MSFfile.java
+++ b/src/jalview/io/MSFfile.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/io/MatrixFile.java b/src/jalview/io/MatrixFile.java

index 09e150c..af74360 100644 (file)
--- a/src/jalview/io/MatrixFile.java
+++ b/src/jalview/io/MatrixFile.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/io/ModellerDescription.java b/src/jalview/io/ModellerDescription.java

index fd28956..60433a8 100755 (executable)
--- a/src/jalview/io/ModellerDescription.java
+++ b/src/jalview/io/ModellerDescription.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/io/NewickFile.java b/src/jalview/io/NewickFile.java

index b86c170..15e901a 100755 (executable)
--- a/src/jalview/io/NewickFile.java
+++ b/src/jalview/io/NewickFile.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/io/PIRFile.java b/src/jalview/io/PIRFile.java

index 6db8cd4..30d1dfb 100755 (executable)
--- a/src/jalview/io/PIRFile.java
+++ b/src/jalview/io/PIRFile.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/io/PfamFile.java b/src/jalview/io/PfamFile.java

index f4d61bc..5758ea2 100755 (executable)
--- a/src/jalview/io/PfamFile.java
+++ b/src/jalview/io/PfamFile.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/io/PileUpfile.java b/src/jalview/io/PileUpfile.java

index aa180ae..efe80e5 100755 (executable)
--- a/src/jalview/io/PileUpfile.java
+++ b/src/jalview/io/PileUpfile.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/io/SequenceAnnotationReport.java b/src/jalview/io/SequenceAnnotationReport.java

index 74cfa86..9c42c9e 100644 (file)
--- a/src/jalview/io/SequenceAnnotationReport.java
+++ b/src/jalview/io/SequenceAnnotationReport.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/io/SimpleBlastFile.java b/src/jalview/io/SimpleBlastFile.java

index 70ccb26..502eced 100644 (file)
--- a/src/jalview/io/SimpleBlastFile.java
+++ b/src/jalview/io/SimpleBlastFile.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/io/StockholmFile.java b/src/jalview/io/StockholmFile.java

index e9c4ed1..accd100 100644 (file)
--- a/src/jalview/io/StockholmFile.java
+++ b/src/jalview/io/StockholmFile.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/io/TCoffeeScoreFile.java b/src/jalview/io/TCoffeeScoreFile.java

index 5b7194e..d500b80 100644 (file)
--- a/src/jalview/io/TCoffeeScoreFile.java
+++ b/src/jalview/io/TCoffeeScoreFile.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/io/VamsasAppDatastore.java b/src/jalview/io/VamsasAppDatastore.java

index 8d1c275..e682419 100644 (file)
--- a/src/jalview/io/VamsasAppDatastore.java
+++ b/src/jalview/io/VamsasAppDatastore.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/io/WSWUBlastClient.java b/src/jalview/io/WSWUBlastClient.java

index df15b5e..a8672f0 100755 (executable)
--- a/src/jalview/io/WSWUBlastClient.java
+++ b/src/jalview/io/WSWUBlastClient.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/io/packed/DataProvider.java b/src/jalview/io/packed/DataProvider.java

index c50c69a..6a459be 100644 (file)
--- a/src/jalview/io/packed/DataProvider.java
+++ b/src/jalview/io/packed/DataProvider.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/io/packed/JalviewDataset.java b/src/jalview/io/packed/JalviewDataset.java

index 40c80a6..60149cf 100644 (file)
--- a/src/jalview/io/packed/JalviewDataset.java
+++ b/src/jalview/io/packed/JalviewDataset.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/io/packed/ParsePackedSet.java b/src/jalview/io/packed/ParsePackedSet.java

index 3130b9e..623af73 100644 (file)
--- a/src/jalview/io/packed/ParsePackedSet.java
+++ b/src/jalview/io/packed/ParsePackedSet.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/io/packed/SimpleDataProvider.java b/src/jalview/io/packed/SimpleDataProvider.java

index fdfd019..d2dcd2c 100644 (file)
--- a/src/jalview/io/packed/SimpleDataProvider.java
+++ b/src/jalview/io/packed/SimpleDataProvider.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/io/vamsas/Datasetsequence.java b/src/jalview/io/vamsas/Datasetsequence.java

index 841d357..e0c7adf 100644 (file)
--- a/src/jalview/io/vamsas/Datasetsequence.java
+++ b/src/jalview/io/vamsas/Datasetsequence.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/io/vamsas/DatastoreItem.java b/src/jalview/io/vamsas/DatastoreItem.java

index 65ccec1..1aba737 100644 (file)
--- a/src/jalview/io/vamsas/DatastoreItem.java
+++ b/src/jalview/io/vamsas/DatastoreItem.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/io/vamsas/DatastoreRegistry.java b/src/jalview/io/vamsas/DatastoreRegistry.java

index 0d76285..f9f056d 100644 (file)
--- a/src/jalview/io/vamsas/DatastoreRegistry.java
+++ b/src/jalview/io/vamsas/DatastoreRegistry.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/io/vamsas/Dbref.java b/src/jalview/io/vamsas/Dbref.java

index 0f43bc3..c40ee8f 100644 (file)
--- a/src/jalview/io/vamsas/Dbref.java
+++ b/src/jalview/io/vamsas/Dbref.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/io/vamsas/LocalDocSyncObject.java b/src/jalview/io/vamsas/LocalDocSyncObject.java

index 2c7bfe0..9a063ec 100644 (file)
--- a/src/jalview/io/vamsas/LocalDocSyncObject.java
+++ b/src/jalview/io/vamsas/LocalDocSyncObject.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/io/vamsas/Rangetype.java b/src/jalview/io/vamsas/Rangetype.java

index fb16f55..1fc2de3 100644 (file)
--- a/src/jalview/io/vamsas/Rangetype.java
+++ b/src/jalview/io/vamsas/Rangetype.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/io/vamsas/Sequencefeature.java b/src/jalview/io/vamsas/Sequencefeature.java

index 9cde411..6ca2857 100644 (file)
--- a/src/jalview/io/vamsas/Sequencefeature.java
+++ b/src/jalview/io/vamsas/Sequencefeature.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/io/vamsas/Sequencemapping.java b/src/jalview/io/vamsas/Sequencemapping.java

index 5dcf4e8..d8c2a95 100644 (file)
--- a/src/jalview/io/vamsas/Sequencemapping.java
+++ b/src/jalview/io/vamsas/Sequencemapping.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/io/vamsas/Tree.java b/src/jalview/io/vamsas/Tree.java

index 27aacce..02ce434 100644 (file)
--- a/src/jalview/io/vamsas/Tree.java
+++ b/src/jalview/io/vamsas/Tree.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/javascript/JSFunctionExec.java b/src/jalview/javascript/JSFunctionExec.java

index 34d1d2e..4a41509 100644 (file)
--- a/src/jalview/javascript/JSFunctionExec.java
+++ b/src/jalview/javascript/JSFunctionExec.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/javascript/JalviewLiteJsApi.java b/src/jalview/javascript/JalviewLiteJsApi.java

index 6878fac..5c4cb30 100644 (file)
--- a/src/jalview/javascript/JalviewLiteJsApi.java
+++ b/src/jalview/javascript/JalviewLiteJsApi.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/javascript/JsCallBack.java b/src/jalview/javascript/JsCallBack.java

index 9320538..2892bda 100644 (file)
--- a/src/jalview/javascript/JsCallBack.java
+++ b/src/jalview/javascript/JsCallBack.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/javascript/JsSelectionSender.java b/src/jalview/javascript/JsSelectionSender.java

index 7ecd675..81164e9 100644 (file)
--- a/src/jalview/javascript/JsSelectionSender.java
+++ b/src/jalview/javascript/JsSelectionSender.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/javascript/MouseOverListener.java b/src/jalview/javascript/MouseOverListener.java

index 4115a9e..5319c65 100644 (file)
--- a/src/jalview/javascript/MouseOverListener.java
+++ b/src/jalview/javascript/MouseOverListener.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/javascript/MouseOverStructureListener.java b/src/jalview/javascript/MouseOverStructureListener.java

index 766393e..a819ac4 100644 (file)
--- a/src/jalview/javascript/MouseOverStructureListener.java
+++ b/src/jalview/javascript/MouseOverStructureListener.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/jbgui/GAlignFrame.java b/src/jalview/jbgui/GAlignFrame.java

index 83ebf18..5f30b57 100755 (executable)
--- a/src/jalview/jbgui/GAlignFrame.java
+++ b/src/jalview/jbgui/GAlignFrame.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/jbgui/GAlignmentPanel.java b/src/jalview/jbgui/GAlignmentPanel.java

index 6a7ab97..a57beff 100755 (executable)
--- a/src/jalview/jbgui/GAlignmentPanel.java
+++ b/src/jalview/jbgui/GAlignmentPanel.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/jbgui/GCutAndPasteHtmlTransfer.java b/src/jalview/jbgui/GCutAndPasteHtmlTransfer.java

index 5f74844..2daa22e 100644 (file)
--- a/src/jalview/jbgui/GCutAndPasteHtmlTransfer.java
+++ b/src/jalview/jbgui/GCutAndPasteHtmlTransfer.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/jbgui/GCutAndPasteTransfer.java b/src/jalview/jbgui/GCutAndPasteTransfer.java

index 4149c85..76ff041 100755 (executable)
--- a/src/jalview/jbgui/GCutAndPasteTransfer.java
+++ b/src/jalview/jbgui/GCutAndPasteTransfer.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/jbgui/GDasSourceBrowser.java b/src/jalview/jbgui/GDasSourceBrowser.java

index b16c013..bddad08 100755 (executable)
--- a/src/jalview/jbgui/GDasSourceBrowser.java
+++ b/src/jalview/jbgui/GDasSourceBrowser.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/jbgui/GDesktop.java b/src/jalview/jbgui/GDesktop.java

index 7c9bbdd..51b4013 100755 (executable)
--- a/src/jalview/jbgui/GDesktop.java
+++ b/src/jalview/jbgui/GDesktop.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/jbgui/GFinder.java b/src/jalview/jbgui/GFinder.java

index 08fdf39..8a9fb12 100755 (executable)
--- a/src/jalview/jbgui/GFinder.java
+++ b/src/jalview/jbgui/GFinder.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/jbgui/GFontChooser.java b/src/jalview/jbgui/GFontChooser.java

index 6985972..47d7182 100755 (executable)
--- a/src/jalview/jbgui/GFontChooser.java
+++ b/src/jalview/jbgui/GFontChooser.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/jbgui/GPCAPanel.java b/src/jalview/jbgui/GPCAPanel.java

index 3fe76ac..1e87a36 100755 (executable)
--- a/src/jalview/jbgui/GPCAPanel.java
+++ b/src/jalview/jbgui/GPCAPanel.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/jbgui/GPairwiseAlignPanel.java b/src/jalview/jbgui/GPairwiseAlignPanel.java

index 57e1348..c2deb1b 100755 (executable)
--- a/src/jalview/jbgui/GPairwiseAlignPanel.java
+++ b/src/jalview/jbgui/GPairwiseAlignPanel.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/jbgui/GPreferences.java b/src/jalview/jbgui/GPreferences.java

index d1df38d..3083d6e 100755 (executable)
--- a/src/jalview/jbgui/GPreferences.java
+++ b/src/jalview/jbgui/GPreferences.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/jbgui/GRestInputParamEditDialog.java b/src/jalview/jbgui/GRestInputParamEditDialog.java

index f1ce039..25f34ff 100644 (file)
--- a/src/jalview/jbgui/GRestInputParamEditDialog.java
+++ b/src/jalview/jbgui/GRestInputParamEditDialog.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/jbgui/GRestServiceEditorPane.java b/src/jalview/jbgui/GRestServiceEditorPane.java

index 50048aa..b4c3065 100644 (file)
--- a/src/jalview/jbgui/GRestServiceEditorPane.java
+++ b/src/jalview/jbgui/GRestServiceEditorPane.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/jbgui/GRnaStructureViewer.java b/src/jalview/jbgui/GRnaStructureViewer.java

index 9e72a13..7ca8ca5 100644 (file)
--- a/src/jalview/jbgui/GRnaStructureViewer.java
+++ b/src/jalview/jbgui/GRnaStructureViewer.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/jbgui/GSequenceLink.java b/src/jalview/jbgui/GSequenceLink.java

index d3b9c54..733b591 100755 (executable)
--- a/src/jalview/jbgui/GSequenceLink.java
+++ b/src/jalview/jbgui/GSequenceLink.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/jbgui/GSliderPanel.java b/src/jalview/jbgui/GSliderPanel.java

index 4c5edf5..7e8e4fc 100755 (executable)
--- a/src/jalview/jbgui/GSliderPanel.java
+++ b/src/jalview/jbgui/GSliderPanel.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/jbgui/GStructureViewer.java b/src/jalview/jbgui/GStructureViewer.java

index 720138a..44e71db 100644 (file)
--- a/src/jalview/jbgui/GStructureViewer.java
+++ b/src/jalview/jbgui/GStructureViewer.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/jbgui/GTreePanel.java b/src/jalview/jbgui/GTreePanel.java

index 1b35d51..d4f2254 100755 (executable)
--- a/src/jalview/jbgui/GTreePanel.java
+++ b/src/jalview/jbgui/GTreePanel.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/jbgui/GUserDefinedColours.java b/src/jalview/jbgui/GUserDefinedColours.java

index 1f4fc9d..d949760 100755 (executable)
--- a/src/jalview/jbgui/GUserDefinedColours.java
+++ b/src/jalview/jbgui/GUserDefinedColours.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/jbgui/GWebserviceInfo.java b/src/jalview/jbgui/GWebserviceInfo.java

index 0d99704..f774afe 100755 (executable)
--- a/src/jalview/jbgui/GWebserviceInfo.java
+++ b/src/jalview/jbgui/GWebserviceInfo.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/jbgui/GWsPreferences.java b/src/jalview/jbgui/GWsPreferences.java

index cae8232..5ade737 100644 (file)
--- a/src/jalview/jbgui/GWsPreferences.java
+++ b/src/jalview/jbgui/GWsPreferences.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/math/Matrix.java b/src/jalview/math/Matrix.java

index 87b0ef3..ebfb688 100755 (executable)
--- a/src/jalview/math/Matrix.java
+++ b/src/jalview/math/Matrix.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/math/RotatableMatrix.java b/src/jalview/math/RotatableMatrix.java

index a4c2940..57e237b 100755 (executable)
--- a/src/jalview/math/RotatableMatrix.java
+++ b/src/jalview/math/RotatableMatrix.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/renderer/AnnotationRenderer.java b/src/jalview/renderer/AnnotationRenderer.java

index fca8523..1c125a6 100644 (file)
--- a/src/jalview/renderer/AnnotationRenderer.java
+++ b/src/jalview/renderer/AnnotationRenderer.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
@@ -681,7 +681,7 @@ public class AnnotationRenderer
                          column, validRes, validEnd);
                  break;
  
-              case 'µ':
+              case '�':
                  drawSheetAnnot(g, row_annotations, lastSSX, x, y, iconOffset, startRes,
                          column, validRes, validEnd);
                  break;
@@ -811,7 +811,7 @@ public class AnnotationRenderer
                    column, validRes, validEnd);
            break;
  
-        case 'µ':
+        case '�':
            drawSheetAnnot(g, row_annotations, lastSSX, x, y, iconOffset, startRes,
                    column, validRes, validEnd);
            break;
diff --git a/src/jalview/renderer/AwtRenderPanelI.java b/src/jalview/renderer/AwtRenderPanelI.java

index 1d46ae3..6f42d0f 100644 (file)
--- a/src/jalview/renderer/AwtRenderPanelI.java
+++ b/src/jalview/renderer/AwtRenderPanelI.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemabinding/version2/AlcodMap.java b/src/jalview/schemabinding/version2/AlcodMap.java

index 8fd8e28..de2d90e 100644 (file)
--- a/src/jalview/schemabinding/version2/AlcodMap.java
+++ b/src/jalview/schemabinding/version2/AlcodMap.java
@@ -1,5 +1,5 @@
  /*******************************************************************************
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemabinding/version2/Alcodon.java b/src/jalview/schemabinding/version2/Alcodon.java

index fd16b40..351b7c1 100644 (file)
--- a/src/jalview/schemabinding/version2/Alcodon.java
+++ b/src/jalview/schemabinding/version2/Alcodon.java
@@ -1,5 +1,5 @@
  /*******************************************************************************
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemabinding/version2/AlcodonFrame.java b/src/jalview/schemabinding/version2/AlcodonFrame.java

index cf48788..16de020 100644 (file)
--- a/src/jalview/schemabinding/version2/AlcodonFrame.java
+++ b/src/jalview/schemabinding/version2/AlcodonFrame.java
@@ -1,5 +1,5 @@
  /*******************************************************************************
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemabinding/version2/Annotation.java b/src/jalview/schemabinding/version2/Annotation.java

index 1c0de1e..b9b13cb 100644 (file)
--- a/src/jalview/schemabinding/version2/Annotation.java
+++ b/src/jalview/schemabinding/version2/Annotation.java
@@ -1,5 +1,5 @@
  /*******************************************************************************
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemabinding/version2/AnnotationColourScheme.java b/src/jalview/schemabinding/version2/AnnotationColourScheme.java

index ca7fbc9..93bc954 100644 (file)
--- a/src/jalview/schemabinding/version2/AnnotationColourScheme.java
+++ b/src/jalview/schemabinding/version2/AnnotationColourScheme.java
@@ -1,5 +1,5 @@
  /*******************************************************************************
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemabinding/version2/AnnotationColours.java b/src/jalview/schemabinding/version2/AnnotationColours.java

index 9f2eada..ea63930 100644 (file)
--- a/src/jalview/schemabinding/version2/AnnotationColours.java
+++ b/src/jalview/schemabinding/version2/AnnotationColours.java
@@ -1,5 +1,5 @@
  /*******************************************************************************
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemabinding/version2/AnnotationElement.java b/src/jalview/schemabinding/version2/AnnotationElement.java

index 26dbe15..7ec0068 100644 (file)
--- a/src/jalview/schemabinding/version2/AnnotationElement.java
+++ b/src/jalview/schemabinding/version2/AnnotationElement.java
@@ -1,5 +1,5 @@
  /*******************************************************************************
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemabinding/version2/CalcIdParam.java b/src/jalview/schemabinding/version2/CalcIdParam.java

index dd4b584..21d516a 100644 (file)
--- a/src/jalview/schemabinding/version2/CalcIdParam.java
+++ b/src/jalview/schemabinding/version2/CalcIdParam.java
@@ -1,5 +1,5 @@
  /*******************************************************************************
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemabinding/version2/Colour.java b/src/jalview/schemabinding/version2/Colour.java

index 4933206..8b792d9 100644 (file)
--- a/src/jalview/schemabinding/version2/Colour.java
+++ b/src/jalview/schemabinding/version2/Colour.java
@@ -1,5 +1,5 @@
  /*******************************************************************************
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemabinding/version2/DBRef.java b/src/jalview/schemabinding/version2/DBRef.java

index 27e1018..c5a94e5 100644 (file)
--- a/src/jalview/schemabinding/version2/DBRef.java
+++ b/src/jalview/schemabinding/version2/DBRef.java
@@ -1,5 +1,5 @@
  /*******************************************************************************
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemabinding/version2/Feature.java b/src/jalview/schemabinding/version2/Feature.java

index 130d515..c88a59b 100644 (file)
--- a/src/jalview/schemabinding/version2/Feature.java
+++ b/src/jalview/schemabinding/version2/Feature.java
@@ -1,5 +1,5 @@
  /*******************************************************************************
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemabinding/version2/FeatureSettings.java b/src/jalview/schemabinding/version2/FeatureSettings.java

index e975554..826b002 100644 (file)
--- a/src/jalview/schemabinding/version2/FeatureSettings.java
+++ b/src/jalview/schemabinding/version2/FeatureSettings.java
@@ -1,5 +1,5 @@
  /*******************************************************************************
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemabinding/version2/Features.java b/src/jalview/schemabinding/version2/Features.java

index d66d8e8..44e8453 100644 (file)
--- a/src/jalview/schemabinding/version2/Features.java
+++ b/src/jalview/schemabinding/version2/Features.java
@@ -1,5 +1,5 @@
  /*******************************************************************************
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemabinding/version2/Group.java b/src/jalview/schemabinding/version2/Group.java

index c16d352..a3f39b5 100644 (file)
--- a/src/jalview/schemabinding/version2/Group.java
+++ b/src/jalview/schemabinding/version2/Group.java
@@ -1,5 +1,5 @@
  /*******************************************************************************
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemabinding/version2/HiddenColumns.java b/src/jalview/schemabinding/version2/HiddenColumns.java

index 811ad33..7023695 100644 (file)
--- a/src/jalview/schemabinding/version2/HiddenColumns.java
+++ b/src/jalview/schemabinding/version2/HiddenColumns.java
@@ -1,5 +1,5 @@
  /*******************************************************************************
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemabinding/version2/JGroup.java b/src/jalview/schemabinding/version2/JGroup.java

index a1f62bc..3de1985 100644 (file)
--- a/src/jalview/schemabinding/version2/JGroup.java
+++ b/src/jalview/schemabinding/version2/JGroup.java
@@ -1,5 +1,5 @@
  /*******************************************************************************
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemabinding/version2/JSeq.java b/src/jalview/schemabinding/version2/JSeq.java

index aa38064..01df69a 100644 (file)
--- a/src/jalview/schemabinding/version2/JSeq.java
+++ b/src/jalview/schemabinding/version2/JSeq.java
@@ -1,5 +1,5 @@
  /*******************************************************************************
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemabinding/version2/JalviewModel.java b/src/jalview/schemabinding/version2/JalviewModel.java

index 6ab4caf..51b9048 100644 (file)
--- a/src/jalview/schemabinding/version2/JalviewModel.java
+++ b/src/jalview/schemabinding/version2/JalviewModel.java
@@ -1,5 +1,5 @@
  /*******************************************************************************
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemabinding/version2/JalviewModelSequence.java b/src/jalview/schemabinding/version2/JalviewModelSequence.java

index 7fd186b..e5942c5 100644 (file)
--- a/src/jalview/schemabinding/version2/JalviewModelSequence.java
+++ b/src/jalview/schemabinding/version2/JalviewModelSequence.java
@@ -1,5 +1,5 @@
  /*******************************************************************************
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemabinding/version2/JalviewUserColours.java b/src/jalview/schemabinding/version2/JalviewUserColours.java

index ccb0963..80e3bf0 100644 (file)
--- a/src/jalview/schemabinding/version2/JalviewUserColours.java
+++ b/src/jalview/schemabinding/version2/JalviewUserColours.java
@@ -1,5 +1,5 @@
  /*******************************************************************************
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemabinding/version2/MapListFrom.java b/src/jalview/schemabinding/version2/MapListFrom.java

index 2817fd6..09e963a 100644 (file)
--- a/src/jalview/schemabinding/version2/MapListFrom.java
+++ b/src/jalview/schemabinding/version2/MapListFrom.java
@@ -1,5 +1,5 @@
  /*******************************************************************************
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemabinding/version2/MapListTo.java b/src/jalview/schemabinding/version2/MapListTo.java

index f185d87..10b1565 100644 (file)
--- a/src/jalview/schemabinding/version2/MapListTo.java
+++ b/src/jalview/schemabinding/version2/MapListTo.java
@@ -1,5 +1,5 @@
  /*******************************************************************************
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemabinding/version2/MapListType.java b/src/jalview/schemabinding/version2/MapListType.java

index 04de497..24694f3 100644 (file)
--- a/src/jalview/schemabinding/version2/MapListType.java
+++ b/src/jalview/schemabinding/version2/MapListType.java
@@ -1,5 +1,5 @@
  /*******************************************************************************
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemabinding/version2/Mapping.java b/src/jalview/schemabinding/version2/Mapping.java

index 91d03d9..3fb98be 100644 (file)
--- a/src/jalview/schemabinding/version2/Mapping.java
+++ b/src/jalview/schemabinding/version2/Mapping.java
@@ -1,5 +1,5 @@
  /*******************************************************************************
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemabinding/version2/MappingChoice.java b/src/jalview/schemabinding/version2/MappingChoice.java

index 614efba..a5043b6 100644 (file)
--- a/src/jalview/schemabinding/version2/MappingChoice.java
+++ b/src/jalview/schemabinding/version2/MappingChoice.java
@@ -1,5 +1,5 @@
  /*******************************************************************************
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemabinding/version2/OtherData.java b/src/jalview/schemabinding/version2/OtherData.java

index 2e5772d..4c2cc9b 100644 (file)
--- a/src/jalview/schemabinding/version2/OtherData.java
+++ b/src/jalview/schemabinding/version2/OtherData.java
@@ -1,5 +1,5 @@
  /*******************************************************************************
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemabinding/version2/Pdbentry.java b/src/jalview/schemabinding/version2/Pdbentry.java

index f207ddc..287c3a9 100644 (file)
--- a/src/jalview/schemabinding/version2/Pdbentry.java
+++ b/src/jalview/schemabinding/version2/Pdbentry.java
@@ -1,5 +1,5 @@
  /*******************************************************************************
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemabinding/version2/PdbentryItem.java b/src/jalview/schemabinding/version2/PdbentryItem.java

index 84aef38..8511b4e 100644 (file)
--- a/src/jalview/schemabinding/version2/PdbentryItem.java
+++ b/src/jalview/schemabinding/version2/PdbentryItem.java
@@ -1,5 +1,5 @@
  /*******************************************************************************
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemabinding/version2/Pdbids.java b/src/jalview/schemabinding/version2/Pdbids.java

index 5e3f13a..cffcfa1 100644 (file)
--- a/src/jalview/schemabinding/version2/Pdbids.java
+++ b/src/jalview/schemabinding/version2/Pdbids.java
@@ -1,5 +1,5 @@
  /*******************************************************************************
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemabinding/version2/Property.java b/src/jalview/schemabinding/version2/Property.java

index 34e0d57..79b32fd 100644 (file)
--- a/src/jalview/schemabinding/version2/Property.java
+++ b/src/jalview/schemabinding/version2/Property.java
@@ -1,5 +1,5 @@
  /*******************************************************************************
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemabinding/version2/Sequence.java b/src/jalview/schemabinding/version2/Sequence.java

index 50ca919..66967fb 100644 (file)
--- a/src/jalview/schemabinding/version2/Sequence.java
+++ b/src/jalview/schemabinding/version2/Sequence.java
@@ -1,5 +1,5 @@
  /*******************************************************************************
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemabinding/version2/SequenceSet.java b/src/jalview/schemabinding/version2/SequenceSet.java

index 568df1f..a65618b 100644 (file)
--- a/src/jalview/schemabinding/version2/SequenceSet.java
+++ b/src/jalview/schemabinding/version2/SequenceSet.java
@@ -1,5 +1,5 @@
  /*******************************************************************************
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemabinding/version2/SequenceSetProperties.java b/src/jalview/schemabinding/version2/SequenceSetProperties.java

index d01f875..dea404a 100644 (file)
--- a/src/jalview/schemabinding/version2/SequenceSetProperties.java
+++ b/src/jalview/schemabinding/version2/SequenceSetProperties.java
@@ -1,5 +1,5 @@
  /*******************************************************************************
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemabinding/version2/SequenceType.java b/src/jalview/schemabinding/version2/SequenceType.java

index 157c83e..df59662 100644 (file)
--- a/src/jalview/schemabinding/version2/SequenceType.java
+++ b/src/jalview/schemabinding/version2/SequenceType.java
@@ -1,5 +1,5 @@
  /*******************************************************************************
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemabinding/version2/Setting.java b/src/jalview/schemabinding/version2/Setting.java

index 58779c5..5d9e7a8 100644 (file)
--- a/src/jalview/schemabinding/version2/Setting.java
+++ b/src/jalview/schemabinding/version2/Setting.java
@@ -1,5 +1,5 @@
  /*******************************************************************************
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemabinding/version2/StructureState.java b/src/jalview/schemabinding/version2/StructureState.java

index 82e3e7b..f22fad9 100644 (file)
--- a/src/jalview/schemabinding/version2/StructureState.java
+++ b/src/jalview/schemabinding/version2/StructureState.java
@@ -1,5 +1,5 @@
  /*******************************************************************************
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemabinding/version2/ThresholdLine.java b/src/jalview/schemabinding/version2/ThresholdLine.java

index 5d5c376..3475619 100644 (file)
--- a/src/jalview/schemabinding/version2/ThresholdLine.java
+++ b/src/jalview/schemabinding/version2/ThresholdLine.java
@@ -1,5 +1,5 @@
  /*******************************************************************************
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemabinding/version2/Tree.java b/src/jalview/schemabinding/version2/Tree.java

index a459edc..7b9091f 100644 (file)
--- a/src/jalview/schemabinding/version2/Tree.java
+++ b/src/jalview/schemabinding/version2/Tree.java
@@ -1,5 +1,5 @@
  /*******************************************************************************
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemabinding/version2/UserColourScheme.java b/src/jalview/schemabinding/version2/UserColourScheme.java

index 3625d87..d145368 100644 (file)
--- a/src/jalview/schemabinding/version2/UserColourScheme.java
+++ b/src/jalview/schemabinding/version2/UserColourScheme.java
@@ -1,5 +1,5 @@
  /*******************************************************************************
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemabinding/version2/UserColours.java b/src/jalview/schemabinding/version2/UserColours.java

index 2a223d4..253b696 100644 (file)
--- a/src/jalview/schemabinding/version2/UserColours.java
+++ b/src/jalview/schemabinding/version2/UserColours.java
@@ -1,5 +1,5 @@
  /*******************************************************************************
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemabinding/version2/VAMSAS.java b/src/jalview/schemabinding/version2/VAMSAS.java

index 2c56862..76bf166 100644 (file)
--- a/src/jalview/schemabinding/version2/VAMSAS.java
+++ b/src/jalview/schemabinding/version2/VAMSAS.java
@@ -1,5 +1,5 @@
  /*******************************************************************************
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemabinding/version2/VamsasModel.java b/src/jalview/schemabinding/version2/VamsasModel.java

index ffde324..287ee77 100644 (file)
--- a/src/jalview/schemabinding/version2/VamsasModel.java
+++ b/src/jalview/schemabinding/version2/VamsasModel.java
@@ -1,5 +1,5 @@
  /*******************************************************************************
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemabinding/version2/Viewport.java b/src/jalview/schemabinding/version2/Viewport.java

index 8dbb94b..77de1ea 100644 (file)
--- a/src/jalview/schemabinding/version2/Viewport.java
+++ b/src/jalview/schemabinding/version2/Viewport.java
@@ -1,5 +1,5 @@
  /*******************************************************************************
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemabinding/version2/WebServiceParameterSet.java b/src/jalview/schemabinding/version2/WebServiceParameterSet.java

index 481c0ce..ff8d694 100644 (file)
--- a/src/jalview/schemabinding/version2/WebServiceParameterSet.java
+++ b/src/jalview/schemabinding/version2/WebServiceParameterSet.java
@@ -1,5 +1,5 @@
  /*******************************************************************************
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemabinding/version2/descriptors/AlcodMapDescriptor.java b/src/jalview/schemabinding/version2/descriptors/AlcodMapDescriptor.java

index f20ad7a..478d41c 100644 (file)
--- a/src/jalview/schemabinding/version2/descriptors/AlcodMapDescriptor.java
+++ b/src/jalview/schemabinding/version2/descriptors/AlcodMapDescriptor.java
@@ -1,5 +1,5 @@
  /*******************************************************************************
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemabinding/version2/descriptors/AlcodonDescriptor.java b/src/jalview/schemabinding/version2/descriptors/AlcodonDescriptor.java

index 171b8af..ecc51bc 100644 (file)
--- a/src/jalview/schemabinding/version2/descriptors/AlcodonDescriptor.java
+++ b/src/jalview/schemabinding/version2/descriptors/AlcodonDescriptor.java
@@ -1,5 +1,5 @@
  /*******************************************************************************
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemabinding/version2/descriptors/AlcodonFrameDescriptor.java b/src/jalview/schemabinding/version2/descriptors/AlcodonFrameDescriptor.java

index 7ff61af..008a4ba 100644 (file)
--- a/src/jalview/schemabinding/version2/descriptors/AlcodonFrameDescriptor.java
+++ b/src/jalview/schemabinding/version2/descriptors/AlcodonFrameDescriptor.java
@@ -1,5 +1,5 @@
  /*******************************************************************************
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemabinding/version2/descriptors/AnnotationColourSchemeDescriptor.java b/src/jalview/schemabinding/version2/descriptors/AnnotationColourSchemeDescriptor.java

index 870a90d..ad1ce7b 100644 (file)
--- a/src/jalview/schemabinding/version2/descriptors/AnnotationColourSchemeDescriptor.java
+++ b/src/jalview/schemabinding/version2/descriptors/AnnotationColourSchemeDescriptor.java
@@ -1,5 +1,5 @@
  /*******************************************************************************
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemabinding/version2/descriptors/AnnotationColoursDescriptor.java b/src/jalview/schemabinding/version2/descriptors/AnnotationColoursDescriptor.java

index 7ddb280..6a368d8 100644 (file)
--- a/src/jalview/schemabinding/version2/descriptors/AnnotationColoursDescriptor.java
+++ b/src/jalview/schemabinding/version2/descriptors/AnnotationColoursDescriptor.java
@@ -1,5 +1,5 @@
  /*******************************************************************************
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemabinding/version2/descriptors/AnnotationDescriptor.java b/src/jalview/schemabinding/version2/descriptors/AnnotationDescriptor.java

index fdb7d00..6d56e7f 100644 (file)
--- a/src/jalview/schemabinding/version2/descriptors/AnnotationDescriptor.java
+++ b/src/jalview/schemabinding/version2/descriptors/AnnotationDescriptor.java
@@ -1,5 +1,5 @@
  /*******************************************************************************
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemabinding/version2/descriptors/AnnotationElementDescriptor.java b/src/jalview/schemabinding/version2/descriptors/AnnotationElementDescriptor.java

index 83a9941..17e0b71 100644 (file)
--- a/src/jalview/schemabinding/version2/descriptors/AnnotationElementDescriptor.java
+++ b/src/jalview/schemabinding/version2/descriptors/AnnotationElementDescriptor.java
@@ -1,5 +1,5 @@
  /*******************************************************************************
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemabinding/version2/descriptors/CalcIdParamDescriptor.java b/src/jalview/schemabinding/version2/descriptors/CalcIdParamDescriptor.java

index 7117178..4c1434f 100644 (file)
--- a/src/jalview/schemabinding/version2/descriptors/CalcIdParamDescriptor.java
+++ b/src/jalview/schemabinding/version2/descriptors/CalcIdParamDescriptor.java
@@ -1,5 +1,5 @@
  /*******************************************************************************
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemabinding/version2/descriptors/ColourDescriptor.java b/src/jalview/schemabinding/version2/descriptors/ColourDescriptor.java

index 493347d..f01acac 100644 (file)
--- a/src/jalview/schemabinding/version2/descriptors/ColourDescriptor.java
+++ b/src/jalview/schemabinding/version2/descriptors/ColourDescriptor.java
@@ -1,5 +1,5 @@
  /*******************************************************************************
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemabinding/version2/descriptors/DBRefDescriptor.java b/src/jalview/schemabinding/version2/descriptors/DBRefDescriptor.java

index 3b5f1dc..ea33df9 100644 (file)
--- a/src/jalview/schemabinding/version2/descriptors/DBRefDescriptor.java
+++ b/src/jalview/schemabinding/version2/descriptors/DBRefDescriptor.java
@@ -1,5 +1,5 @@
  /*******************************************************************************
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemabinding/version2/descriptors/FeatureDescriptor.java b/src/jalview/schemabinding/version2/descriptors/FeatureDescriptor.java

index 4fd913f..9ed71b6 100644 (file)
--- a/src/jalview/schemabinding/version2/descriptors/FeatureDescriptor.java
+++ b/src/jalview/schemabinding/version2/descriptors/FeatureDescriptor.java
@@ -1,5 +1,5 @@
  /*******************************************************************************
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemabinding/version2/descriptors/FeatureSettingsDescriptor.java b/src/jalview/schemabinding/version2/descriptors/FeatureSettingsDescriptor.java

index 3f41d5d..9479e8f 100644 (file)
--- a/src/jalview/schemabinding/version2/descriptors/FeatureSettingsDescriptor.java
+++ b/src/jalview/schemabinding/version2/descriptors/FeatureSettingsDescriptor.java
@@ -1,5 +1,5 @@
  /*******************************************************************************
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemabinding/version2/descriptors/FeaturesDescriptor.java b/src/jalview/schemabinding/version2/descriptors/FeaturesDescriptor.java

index cdc2b0a..2e7e089 100644 (file)
--- a/src/jalview/schemabinding/version2/descriptors/FeaturesDescriptor.java
+++ b/src/jalview/schemabinding/version2/descriptors/FeaturesDescriptor.java
@@ -1,5 +1,5 @@
  /*******************************************************************************
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemabinding/version2/descriptors/GroupDescriptor.java b/src/jalview/schemabinding/version2/descriptors/GroupDescriptor.java

index d2ffed1..d22883a 100644 (file)
--- a/src/jalview/schemabinding/version2/descriptors/GroupDescriptor.java
+++ b/src/jalview/schemabinding/version2/descriptors/GroupDescriptor.java
@@ -1,5 +1,5 @@
  /*******************************************************************************
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemabinding/version2/descriptors/HiddenColumnsDescriptor.java b/src/jalview/schemabinding/version2/descriptors/HiddenColumnsDescriptor.java

index a5fdfa0..31ded68 100644 (file)
--- a/src/jalview/schemabinding/version2/descriptors/HiddenColumnsDescriptor.java
+++ b/src/jalview/schemabinding/version2/descriptors/HiddenColumnsDescriptor.java
@@ -1,5 +1,5 @@
  /*******************************************************************************
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemabinding/version2/descriptors/JGroupDescriptor.java b/src/jalview/schemabinding/version2/descriptors/JGroupDescriptor.java

index 47917d6..c958b7e 100644 (file)
--- a/src/jalview/schemabinding/version2/descriptors/JGroupDescriptor.java
+++ b/src/jalview/schemabinding/version2/descriptors/JGroupDescriptor.java
@@ -1,5 +1,5 @@
  /*******************************************************************************
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemabinding/version2/descriptors/JSeqDescriptor.java b/src/jalview/schemabinding/version2/descriptors/JSeqDescriptor.java

index ba1c904..cee0cf0 100644 (file)
--- a/src/jalview/schemabinding/version2/descriptors/JSeqDescriptor.java
+++ b/src/jalview/schemabinding/version2/descriptors/JSeqDescriptor.java
@@ -1,5 +1,5 @@
  /*******************************************************************************
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemabinding/version2/descriptors/JalviewModelDescriptor.java b/src/jalview/schemabinding/version2/descriptors/JalviewModelDescriptor.java

index 22d130f..a916a85 100644 (file)
--- a/src/jalview/schemabinding/version2/descriptors/JalviewModelDescriptor.java
+++ b/src/jalview/schemabinding/version2/descriptors/JalviewModelDescriptor.java
@@ -1,5 +1,5 @@
  /*******************************************************************************
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemabinding/version2/descriptors/JalviewModelSequenceDescriptor.java b/src/jalview/schemabinding/version2/descriptors/JalviewModelSequenceDescriptor.java

index b1ff133..5a635fd 100644 (file)
--- a/src/jalview/schemabinding/version2/descriptors/JalviewModelSequenceDescriptor.java
+++ b/src/jalview/schemabinding/version2/descriptors/JalviewModelSequenceDescriptor.java
@@ -1,5 +1,5 @@
  /*******************************************************************************
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemabinding/version2/descriptors/JalviewUserColoursDescriptor.java b/src/jalview/schemabinding/version2/descriptors/JalviewUserColoursDescriptor.java

index 34f4d98..5a62258 100644 (file)
--- a/src/jalview/schemabinding/version2/descriptors/JalviewUserColoursDescriptor.java
+++ b/src/jalview/schemabinding/version2/descriptors/JalviewUserColoursDescriptor.java
@@ -1,5 +1,5 @@
  /*******************************************************************************
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemabinding/version2/descriptors/MapListFromDescriptor.java b/src/jalview/schemabinding/version2/descriptors/MapListFromDescriptor.java

index 05a7ccc..913f5f4 100644 (file)
--- a/src/jalview/schemabinding/version2/descriptors/MapListFromDescriptor.java
+++ b/src/jalview/schemabinding/version2/descriptors/MapListFromDescriptor.java
@@ -1,5 +1,5 @@
  /*******************************************************************************
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemabinding/version2/descriptors/MapListToDescriptor.java b/src/jalview/schemabinding/version2/descriptors/MapListToDescriptor.java

index 96bfee6..a38290d 100644 (file)
--- a/src/jalview/schemabinding/version2/descriptors/MapListToDescriptor.java
+++ b/src/jalview/schemabinding/version2/descriptors/MapListToDescriptor.java
@@ -1,5 +1,5 @@
  /*******************************************************************************
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemabinding/version2/descriptors/MapListTypeDescriptor.java b/src/jalview/schemabinding/version2/descriptors/MapListTypeDescriptor.java

index a84177b..d8e59f7 100644 (file)
--- a/src/jalview/schemabinding/version2/descriptors/MapListTypeDescriptor.java
+++ b/src/jalview/schemabinding/version2/descriptors/MapListTypeDescriptor.java
@@ -1,5 +1,5 @@
  /*******************************************************************************
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemabinding/version2/descriptors/MappingChoiceDescriptor.java b/src/jalview/schemabinding/version2/descriptors/MappingChoiceDescriptor.java

index 4498c7a..718864f 100644 (file)
--- a/src/jalview/schemabinding/version2/descriptors/MappingChoiceDescriptor.java
+++ b/src/jalview/schemabinding/version2/descriptors/MappingChoiceDescriptor.java
@@ -1,5 +1,5 @@
  /*******************************************************************************
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemabinding/version2/descriptors/MappingDescriptor.java b/src/jalview/schemabinding/version2/descriptors/MappingDescriptor.java

index 24520c8..3ac69bc 100644 (file)
--- a/src/jalview/schemabinding/version2/descriptors/MappingDescriptor.java
+++ b/src/jalview/schemabinding/version2/descriptors/MappingDescriptor.java
@@ -1,5 +1,5 @@
  /*******************************************************************************
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemabinding/version2/descriptors/OtherDataDescriptor.java b/src/jalview/schemabinding/version2/descriptors/OtherDataDescriptor.java

index 057a804..e2b09b3 100644 (file)
--- a/src/jalview/schemabinding/version2/descriptors/OtherDataDescriptor.java
+++ b/src/jalview/schemabinding/version2/descriptors/OtherDataDescriptor.java
@@ -1,5 +1,5 @@
  /*******************************************************************************
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemabinding/version2/descriptors/PdbentryDescriptor.java b/src/jalview/schemabinding/version2/descriptors/PdbentryDescriptor.java

index afb41ba..432add5 100644 (file)
--- a/src/jalview/schemabinding/version2/descriptors/PdbentryDescriptor.java
+++ b/src/jalview/schemabinding/version2/descriptors/PdbentryDescriptor.java
@@ -1,5 +1,5 @@
  /*******************************************************************************
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemabinding/version2/descriptors/PdbentryItemDescriptor.java b/src/jalview/schemabinding/version2/descriptors/PdbentryItemDescriptor.java

index 5f823dc..83de39a 100644 (file)
--- a/src/jalview/schemabinding/version2/descriptors/PdbentryItemDescriptor.java
+++ b/src/jalview/schemabinding/version2/descriptors/PdbentryItemDescriptor.java
@@ -1,5 +1,5 @@
  /*******************************************************************************
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemabinding/version2/descriptors/PdbidsDescriptor.java b/src/jalview/schemabinding/version2/descriptors/PdbidsDescriptor.java

index 24108d4..91b1190 100644 (file)
--- a/src/jalview/schemabinding/version2/descriptors/PdbidsDescriptor.java
+++ b/src/jalview/schemabinding/version2/descriptors/PdbidsDescriptor.java
@@ -1,5 +1,5 @@
  /*******************************************************************************
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemabinding/version2/descriptors/PropertyDescriptor.java b/src/jalview/schemabinding/version2/descriptors/PropertyDescriptor.java

index a231d17..48017b0 100644 (file)
--- a/src/jalview/schemabinding/version2/descriptors/PropertyDescriptor.java
+++ b/src/jalview/schemabinding/version2/descriptors/PropertyDescriptor.java
@@ -1,5 +1,5 @@
  /*******************************************************************************
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemabinding/version2/descriptors/SequenceDescriptor.java b/src/jalview/schemabinding/version2/descriptors/SequenceDescriptor.java

index a4e83f4..bd34ed6 100644 (file)
--- a/src/jalview/schemabinding/version2/descriptors/SequenceDescriptor.java
+++ b/src/jalview/schemabinding/version2/descriptors/SequenceDescriptor.java
@@ -1,5 +1,5 @@
  /*******************************************************************************
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemabinding/version2/descriptors/SequenceSetDescriptor.java b/src/jalview/schemabinding/version2/descriptors/SequenceSetDescriptor.java

index e9e0cb8..1f94a17 100644 (file)
--- a/src/jalview/schemabinding/version2/descriptors/SequenceSetDescriptor.java
+++ b/src/jalview/schemabinding/version2/descriptors/SequenceSetDescriptor.java
@@ -1,5 +1,5 @@
  /*******************************************************************************
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemabinding/version2/descriptors/SequenceSetPropertiesDescriptor.java b/src/jalview/schemabinding/version2/descriptors/SequenceSetPropertiesDescriptor.java

index 06ee93d..7bb2d8c 100644 (file)
--- a/src/jalview/schemabinding/version2/descriptors/SequenceSetPropertiesDescriptor.java
+++ b/src/jalview/schemabinding/version2/descriptors/SequenceSetPropertiesDescriptor.java
@@ -1,5 +1,5 @@
  /*******************************************************************************
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemabinding/version2/descriptors/SequenceTypeDescriptor.java b/src/jalview/schemabinding/version2/descriptors/SequenceTypeDescriptor.java

index 8e60014..ac94bb9 100644 (file)
--- a/src/jalview/schemabinding/version2/descriptors/SequenceTypeDescriptor.java
+++ b/src/jalview/schemabinding/version2/descriptors/SequenceTypeDescriptor.java
@@ -1,5 +1,5 @@
  /*******************************************************************************
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemabinding/version2/descriptors/SettingDescriptor.java b/src/jalview/schemabinding/version2/descriptors/SettingDescriptor.java

index 38c5fcf..e84d2a0 100644 (file)
--- a/src/jalview/schemabinding/version2/descriptors/SettingDescriptor.java
+++ b/src/jalview/schemabinding/version2/descriptors/SettingDescriptor.java
@@ -1,5 +1,5 @@
  /*******************************************************************************
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemabinding/version2/descriptors/StructureStateDescriptor.java b/src/jalview/schemabinding/version2/descriptors/StructureStateDescriptor.java

index b687586..02a3684 100644 (file)
--- a/src/jalview/schemabinding/version2/descriptors/StructureStateDescriptor.java
+++ b/src/jalview/schemabinding/version2/descriptors/StructureStateDescriptor.java
@@ -1,5 +1,5 @@
  /*******************************************************************************
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemabinding/version2/descriptors/ThresholdLineDescriptor.java b/src/jalview/schemabinding/version2/descriptors/ThresholdLineDescriptor.java

index 96cf9c7..4fee9d0 100644 (file)
--- a/src/jalview/schemabinding/version2/descriptors/ThresholdLineDescriptor.java
+++ b/src/jalview/schemabinding/version2/descriptors/ThresholdLineDescriptor.java
@@ -1,5 +1,5 @@
  /*******************************************************************************
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemabinding/version2/descriptors/TreeDescriptor.java b/src/jalview/schemabinding/version2/descriptors/TreeDescriptor.java

index 6d92ec3..dc0158c 100644 (file)
--- a/src/jalview/schemabinding/version2/descriptors/TreeDescriptor.java
+++ b/src/jalview/schemabinding/version2/descriptors/TreeDescriptor.java
@@ -1,5 +1,5 @@
  /*******************************************************************************
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemabinding/version2/descriptors/UserColourSchemeDescriptor.java b/src/jalview/schemabinding/version2/descriptors/UserColourSchemeDescriptor.java

index b4253f6..f3cf66c 100644 (file)
--- a/src/jalview/schemabinding/version2/descriptors/UserColourSchemeDescriptor.java
+++ b/src/jalview/schemabinding/version2/descriptors/UserColourSchemeDescriptor.java
@@ -1,5 +1,5 @@
  /*******************************************************************************
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemabinding/version2/descriptors/UserColoursDescriptor.java b/src/jalview/schemabinding/version2/descriptors/UserColoursDescriptor.java

index 0c27408..d72b379 100644 (file)
--- a/src/jalview/schemabinding/version2/descriptors/UserColoursDescriptor.java
+++ b/src/jalview/schemabinding/version2/descriptors/UserColoursDescriptor.java
@@ -1,5 +1,5 @@
  /*******************************************************************************
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemabinding/version2/descriptors/VAMSASDescriptor.java b/src/jalview/schemabinding/version2/descriptors/VAMSASDescriptor.java

index e35407c..54c34a9 100644 (file)
--- a/src/jalview/schemabinding/version2/descriptors/VAMSASDescriptor.java
+++ b/src/jalview/schemabinding/version2/descriptors/VAMSASDescriptor.java
@@ -1,5 +1,5 @@
  /*******************************************************************************
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemabinding/version2/descriptors/VamsasModelDescriptor.java b/src/jalview/schemabinding/version2/descriptors/VamsasModelDescriptor.java

index 60ab87e..94b5388 100644 (file)
--- a/src/jalview/schemabinding/version2/descriptors/VamsasModelDescriptor.java
+++ b/src/jalview/schemabinding/version2/descriptors/VamsasModelDescriptor.java
@@ -1,5 +1,5 @@
  /*******************************************************************************
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemabinding/version2/descriptors/ViewportDescriptor.java b/src/jalview/schemabinding/version2/descriptors/ViewportDescriptor.java

index f995afa..4920b5a 100644 (file)
--- a/src/jalview/schemabinding/version2/descriptors/ViewportDescriptor.java
+++ b/src/jalview/schemabinding/version2/descriptors/ViewportDescriptor.java
@@ -1,5 +1,5 @@
  /*******************************************************************************
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemabinding/version2/descriptors/WebServiceParameterSetDescriptor.java b/src/jalview/schemabinding/version2/descriptors/WebServiceParameterSetDescriptor.java

index 396379f..27fdd96 100644 (file)
--- a/src/jalview/schemabinding/version2/descriptors/WebServiceParameterSetDescriptor.java
+++ b/src/jalview/schemabinding/version2/descriptors/WebServiceParameterSetDescriptor.java
@@ -1,5 +1,5 @@
  /*******************************************************************************
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemes/AnnotationColourGradient.java b/src/jalview/schemes/AnnotationColourGradient.java

index 301eb73..c6daa66 100755 (executable)
--- a/src/jalview/schemes/AnnotationColourGradient.java
+++ b/src/jalview/schemes/AnnotationColourGradient.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemes/Blosum62ColourScheme.java b/src/jalview/schemes/Blosum62ColourScheme.java

index 8d8eba0..fb6a392 100755 (executable)
--- a/src/jalview/schemes/Blosum62ColourScheme.java
+++ b/src/jalview/schemes/Blosum62ColourScheme.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemes/BuriedColourScheme.java b/src/jalview/schemes/BuriedColourScheme.java

index f7b186f..247ecf8 100755 (executable)
--- a/src/jalview/schemes/BuriedColourScheme.java
+++ b/src/jalview/schemes/BuriedColourScheme.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemes/ClustalxColourScheme.java b/src/jalview/schemes/ClustalxColourScheme.java

index 30addb0..e726cb9 100755 (executable)
--- a/src/jalview/schemes/ClustalxColourScheme.java
+++ b/src/jalview/schemes/ClustalxColourScheme.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemes/ColourSchemeI.java b/src/jalview/schemes/ColourSchemeI.java

index 66be80d..7adc54c 100755 (executable)
--- a/src/jalview/schemes/ColourSchemeI.java
+++ b/src/jalview/schemes/ColourSchemeI.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemes/ColourSchemeProperty.java b/src/jalview/schemes/ColourSchemeProperty.java

index e80860e..e680e04 100755 (executable)
--- a/src/jalview/schemes/ColourSchemeProperty.java
+++ b/src/jalview/schemes/ColourSchemeProperty.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemes/Consensus.java b/src/jalview/schemes/Consensus.java

index b5cfcc9..c8c99bf 100755 (executable)
--- a/src/jalview/schemes/Consensus.java
+++ b/src/jalview/schemes/Consensus.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemes/CovariationColourScheme.java b/src/jalview/schemes/CovariationColourScheme.java

index 62d0b7b..223b249 100644 (file)
--- a/src/jalview/schemes/CovariationColourScheme.java
+++ b/src/jalview/schemes/CovariationColourScheme.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemes/GraduatedColor.java b/src/jalview/schemes/GraduatedColor.java

index 665a78b..2069dce 100644 (file)
--- a/src/jalview/schemes/GraduatedColor.java
+++ b/src/jalview/schemes/GraduatedColor.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemes/HelixColourScheme.java b/src/jalview/schemes/HelixColourScheme.java

index b060788..655c488 100755 (executable)
--- a/src/jalview/schemes/HelixColourScheme.java
+++ b/src/jalview/schemes/HelixColourScheme.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemes/HydrophobicColourScheme.java b/src/jalview/schemes/HydrophobicColourScheme.java

index 4674aed..2cc0b91 100755 (executable)
--- a/src/jalview/schemes/HydrophobicColourScheme.java
+++ b/src/jalview/schemes/HydrophobicColourScheme.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemes/NucleotideColourScheme.java b/src/jalview/schemes/NucleotideColourScheme.java

index 6b1ac51..5844aa2 100755 (executable)
--- a/src/jalview/schemes/NucleotideColourScheme.java
+++ b/src/jalview/schemes/NucleotideColourScheme.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemes/PIDColourScheme.java b/src/jalview/schemes/PIDColourScheme.java

index 57a5023..65a2375 100755 (executable)
--- a/src/jalview/schemes/PIDColourScheme.java
+++ b/src/jalview/schemes/PIDColourScheme.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemes/PurinePyrimidineColourScheme.java b/src/jalview/schemes/PurinePyrimidineColourScheme.java

index 0a088c6..df5e171 100644 (file)
--- a/src/jalview/schemes/PurinePyrimidineColourScheme.java
+++ b/src/jalview/schemes/PurinePyrimidineColourScheme.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemes/RNAHelicesColour.java b/src/jalview/schemes/RNAHelicesColour.java

index 0a37052..4cfa45b 100644 (file)
--- a/src/jalview/schemes/RNAHelicesColour.java
+++ b/src/jalview/schemes/RNAHelicesColour.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemes/RNAHelicesColourChooser.java b/src/jalview/schemes/RNAHelicesColourChooser.java

index cfa20f4..1596f46 100644 (file)
--- a/src/jalview/schemes/RNAHelicesColourChooser.java
+++ b/src/jalview/schemes/RNAHelicesColourChooser.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemes/ResidueColourScheme.java b/src/jalview/schemes/ResidueColourScheme.java

index 4eefcda..6058e56 100755 (executable)
--- a/src/jalview/schemes/ResidueColourScheme.java
+++ b/src/jalview/schemes/ResidueColourScheme.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemes/ResidueProperties.java b/src/jalview/schemes/ResidueProperties.java

index 43f45d0..301a410 100755 (executable)
--- a/src/jalview/schemes/ResidueProperties.java
+++ b/src/jalview/schemes/ResidueProperties.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemes/ScoreColourScheme.java b/src/jalview/schemes/ScoreColourScheme.java

index 6eef929..505af0b 100755 (executable)
--- a/src/jalview/schemes/ScoreColourScheme.java
+++ b/src/jalview/schemes/ScoreColourScheme.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemes/ScoreMatrix.java b/src/jalview/schemes/ScoreMatrix.java

index 88b0f9c..1abcfbe 100644 (file)
--- a/src/jalview/schemes/ScoreMatrix.java
+++ b/src/jalview/schemes/ScoreMatrix.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemes/StrandColourScheme.java b/src/jalview/schemes/StrandColourScheme.java

index 6b4b597..631ca29 100755 (executable)
--- a/src/jalview/schemes/StrandColourScheme.java
+++ b/src/jalview/schemes/StrandColourScheme.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemes/TCoffeeColourScheme.java b/src/jalview/schemes/TCoffeeColourScheme.java

index cd2681b..1fb4cbb 100644 (file)
--- a/src/jalview/schemes/TCoffeeColourScheme.java
+++ b/src/jalview/schemes/TCoffeeColourScheme.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemes/TaylorColourScheme.java b/src/jalview/schemes/TaylorColourScheme.java

index 80cb1fe..0a912d2 100755 (executable)
--- a/src/jalview/schemes/TaylorColourScheme.java
+++ b/src/jalview/schemes/TaylorColourScheme.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemes/TurnColourScheme.java b/src/jalview/schemes/TurnColourScheme.java

index 1cc297a..004d037 100755 (executable)
--- a/src/jalview/schemes/TurnColourScheme.java
+++ b/src/jalview/schemes/TurnColourScheme.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemes/UserColourScheme.java b/src/jalview/schemes/UserColourScheme.java

index 08b7abf..d73bed2 100755 (executable)
--- a/src/jalview/schemes/UserColourScheme.java
+++ b/src/jalview/schemes/UserColourScheme.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemes/ZappoColourScheme.java b/src/jalview/schemes/ZappoColourScheme.java

index d2cdde9..f3c1d5d 100755 (executable)
--- a/src/jalview/schemes/ZappoColourScheme.java
+++ b/src/jalview/schemes/ZappoColourScheme.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/structure/AlignmentViewPanelListener.java b/src/jalview/structure/AlignmentViewPanelListener.java

index 2dcc4d0..7b871be 100644 (file)
--- a/src/jalview/structure/AlignmentViewPanelListener.java
+++ b/src/jalview/structure/AlignmentViewPanelListener.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/structure/SecondaryStructureListener.java b/src/jalview/structure/SecondaryStructureListener.java

index c01e0dd..7716039 100644 (file)
--- a/src/jalview/structure/SecondaryStructureListener.java
+++ b/src/jalview/structure/SecondaryStructureListener.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/structure/SelectionListener.java b/src/jalview/structure/SelectionListener.java

index 7c5f450..7092e74 100644 (file)
--- a/src/jalview/structure/SelectionListener.java
+++ b/src/jalview/structure/SelectionListener.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/structure/SelectionSource.java b/src/jalview/structure/SelectionSource.java

index 1e28bd4..6a316c1 100644 (file)
--- a/src/jalview/structure/SelectionSource.java
+++ b/src/jalview/structure/SelectionSource.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/structure/SequenceListener.java b/src/jalview/structure/SequenceListener.java

index bf53258..6bdefe0 100644 (file)
--- a/src/jalview/structure/SequenceListener.java
+++ b/src/jalview/structure/SequenceListener.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/structure/StructureListener.java b/src/jalview/structure/StructureListener.java

index eef46a7..1307346 100644 (file)
--- a/src/jalview/structure/StructureListener.java
+++ b/src/jalview/structure/StructureListener.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/structure/StructureMapping.java b/src/jalview/structure/StructureMapping.java

index d28446f..a8efcda 100644 (file)
--- a/src/jalview/structure/StructureMapping.java
+++ b/src/jalview/structure/StructureMapping.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/structure/StructureMappingcommandSet.java b/src/jalview/structure/StructureMappingcommandSet.java

index a0eaf7b..01d83c3 100644 (file)
--- a/src/jalview/structure/StructureMappingcommandSet.java
+++ b/src/jalview/structure/StructureMappingcommandSet.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/structure/StructureSelectionManager.java b/src/jalview/structure/StructureSelectionManager.java

index bf14000..c69b3ad 100644 (file)
--- a/src/jalview/structure/StructureSelectionManager.java
+++ b/src/jalview/structure/StructureSelectionManager.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/structure/VamsasListener.java b/src/jalview/structure/VamsasListener.java

index 145d2d5..2549b17 100644 (file)
--- a/src/jalview/structure/VamsasListener.java
+++ b/src/jalview/structure/VamsasListener.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/structure/VamsasSource.java b/src/jalview/structure/VamsasSource.java

index cab0c23..6e7d1a7 100644 (file)
--- a/src/jalview/structure/VamsasSource.java
+++ b/src/jalview/structure/VamsasSource.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/util/AWTConsole.java b/src/jalview/util/AWTConsole.java

index 3ac2927..6b0ee62 100644 (file)
--- a/src/jalview/util/AWTConsole.java
+++ b/src/jalview/util/AWTConsole.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/util/BrowserLauncher.java b/src/jalview/util/BrowserLauncher.java

index cf898b7..2e4a262 100755 (executable)
--- a/src/jalview/util/BrowserLauncher.java
+++ b/src/jalview/util/BrowserLauncher.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/util/ColorUtils.java b/src/jalview/util/ColorUtils.java

index 1ab6361..7e3a88f 100644 (file)
--- a/src/jalview/util/ColorUtils.java
+++ b/src/jalview/util/ColorUtils.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/util/Comparison.java b/src/jalview/util/Comparison.java

index 4f2c0a7..08d2c88 100644 (file)
--- a/src/jalview/util/Comparison.java
+++ b/src/jalview/util/Comparison.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/util/DBRefUtils.java b/src/jalview/util/DBRefUtils.java

index 569a6df..98a6b70 100755 (executable)
--- a/src/jalview/util/DBRefUtils.java
+++ b/src/jalview/util/DBRefUtils.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/util/Format.java b/src/jalview/util/Format.java

index 5bab738..5eedc44 100755 (executable)
--- a/src/jalview/util/Format.java
+++ b/src/jalview/util/Format.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/util/GroupUrlLink.java b/src/jalview/util/GroupUrlLink.java

index 4642ad8..1654aef 100644 (file)
--- a/src/jalview/util/GroupUrlLink.java
+++ b/src/jalview/util/GroupUrlLink.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/util/ImageMaker.java b/src/jalview/util/ImageMaker.java

index 7c429f3..750d6b3 100755 (executable)
--- a/src/jalview/util/ImageMaker.java
+++ b/src/jalview/util/ImageMaker.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/util/MapList.java b/src/jalview/util/MapList.java

index c7a32f7..b6e7bcc 100644 (file)
--- a/src/jalview/util/MapList.java
+++ b/src/jalview/util/MapList.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/util/ParseHtmlBodyAndLinks.java b/src/jalview/util/ParseHtmlBodyAndLinks.java

index 102bead..e8996d5 100644 (file)
--- a/src/jalview/util/ParseHtmlBodyAndLinks.java
+++ b/src/jalview/util/ParseHtmlBodyAndLinks.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/util/Platform.java b/src/jalview/util/Platform.java

index 8c406a9..b424142 100644 (file)
--- a/src/jalview/util/Platform.java
+++ b/src/jalview/util/Platform.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/util/QuickSort.java b/src/jalview/util/QuickSort.java

index 1d9d8ec..ef88ffb 100755 (executable)
--- a/src/jalview/util/QuickSort.java
+++ b/src/jalview/util/QuickSort.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/util/ShiftList.java b/src/jalview/util/ShiftList.java

index 3c0683a..9cbad3a 100644 (file)
--- a/src/jalview/util/ShiftList.java
+++ b/src/jalview/util/ShiftList.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/util/TableSorter.java b/src/jalview/util/TableSorter.java

index 3352cbb..06e994c 100755 (executable)
--- a/src/jalview/util/TableSorter.java
+++ b/src/jalview/util/TableSorter.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/util/UrlLink.java b/src/jalview/util/UrlLink.java

index 2936ac3..5e08b0e 100644 (file)
--- a/src/jalview/util/UrlLink.java
+++ b/src/jalview/util/UrlLink.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/util/jarInputStreamProvider.java b/src/jalview/util/jarInputStreamProvider.java

index 76e612f..2c18175 100644 (file)
--- a/src/jalview/util/jarInputStreamProvider.java
+++ b/src/jalview/util/jarInputStreamProvider.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/viewmodel/AlignmentViewport.java b/src/jalview/viewmodel/AlignmentViewport.java

index e25818e..bb5cc7a 100644 (file)
--- a/src/jalview/viewmodel/AlignmentViewport.java
+++ b/src/jalview/viewmodel/AlignmentViewport.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/viewmodel/PCAModel.java b/src/jalview/viewmodel/PCAModel.java

index a9c8787..cb6deed 100644 (file)
--- a/src/jalview/viewmodel/PCAModel.java
+++ b/src/jalview/viewmodel/PCAModel.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/workers/AlignCalcManager.java b/src/jalview/workers/AlignCalcManager.java

index 6a2d6ee..9d2c661 100644 (file)
--- a/src/jalview/workers/AlignCalcManager.java
+++ b/src/jalview/workers/AlignCalcManager.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/workers/AlignCalcWorker.java b/src/jalview/workers/AlignCalcWorker.java

index 18bff53..9fbd500 100644 (file)
--- a/src/jalview/workers/AlignCalcWorker.java
+++ b/src/jalview/workers/AlignCalcWorker.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/workers/ConsensusThread.java b/src/jalview/workers/ConsensusThread.java

index 735b97f..86cebc4 100644 (file)
--- a/src/jalview/workers/ConsensusThread.java
+++ b/src/jalview/workers/ConsensusThread.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/workers/ConservationThread.java b/src/jalview/workers/ConservationThread.java

index cae430f..c440c0f 100644 (file)
--- a/src/jalview/workers/ConservationThread.java
+++ b/src/jalview/workers/ConservationThread.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/workers/StrucConsensusThread.java b/src/jalview/workers/StrucConsensusThread.java

index 1fc6d01..3d0526a 100644 (file)
--- a/src/jalview/workers/StrucConsensusThread.java
+++ b/src/jalview/workers/StrucConsensusThread.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ws/AWSThread.java b/src/jalview/ws/AWSThread.java

index 37d064d..0167690 100644 (file)
--- a/src/jalview/ws/AWSThread.java
+++ b/src/jalview/ws/AWSThread.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ws/AWsJob.java b/src/jalview/ws/AWsJob.java

index 91f9644..7e8c7b9 100644 (file)
--- a/src/jalview/ws/AWsJob.java
+++ b/src/jalview/ws/AWsJob.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ws/DBRefFetcher.java b/src/jalview/ws/DBRefFetcher.java

index 7b06a71..f46779b 100644 (file)
--- a/src/jalview/ws/DBRefFetcher.java
+++ b/src/jalview/ws/DBRefFetcher.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ws/DasSequenceFeatureFetcher.java b/src/jalview/ws/DasSequenceFeatureFetcher.java

index 08070db..c4c8d6b 100644 (file)
--- a/src/jalview/ws/DasSequenceFeatureFetcher.java
+++ b/src/jalview/ws/DasSequenceFeatureFetcher.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ws/EnfinEnvision2OneWay.java b/src/jalview/ws/EnfinEnvision2OneWay.java

index edc7fb7..625c45a 100644 (file)
--- a/src/jalview/ws/EnfinEnvision2OneWay.java
+++ b/src/jalview/ws/EnfinEnvision2OneWay.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ws/JobStateSummary.java b/src/jalview/ws/JobStateSummary.java

index dd68f93..b41519e 100644 (file)
--- a/src/jalview/ws/JobStateSummary.java
+++ b/src/jalview/ws/JobStateSummary.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ws/SequenceFetcher.java b/src/jalview/ws/SequenceFetcher.java

index ecaa57a..2488f91 100644 (file)
--- a/src/jalview/ws/SequenceFetcher.java
+++ b/src/jalview/ws/SequenceFetcher.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ws/WSClient.java b/src/jalview/ws/WSClient.java

index c41a2f7..e0f1b42 100755 (executable)
--- a/src/jalview/ws/WSClient.java
+++ b/src/jalview/ws/WSClient.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ws/WSClientI.java b/src/jalview/ws/WSClientI.java

index e2aa3c7..9aaf829 100755 (executable)
--- a/src/jalview/ws/WSClientI.java
+++ b/src/jalview/ws/WSClientI.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ws/WSMenuEntryProviderI.java b/src/jalview/ws/WSMenuEntryProviderI.java

index 0cfb238..9b75fae 100644 (file)
--- a/src/jalview/ws/WSMenuEntryProviderI.java
+++ b/src/jalview/ws/WSMenuEntryProviderI.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ws/dbsources/EbiFileRetrievedProxy.java b/src/jalview/ws/dbsources/EbiFileRetrievedProxy.java

index 9e1a848..b704596 100644 (file)
--- a/src/jalview/ws/dbsources/EbiFileRetrievedProxy.java
+++ b/src/jalview/ws/dbsources/EbiFileRetrievedProxy.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ws/dbsources/EmblCdsSouce.java b/src/jalview/ws/dbsources/EmblCdsSouce.java

index a317fa4..dc08f6c 100644 (file)
--- a/src/jalview/ws/dbsources/EmblCdsSouce.java
+++ b/src/jalview/ws/dbsources/EmblCdsSouce.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ws/dbsources/EmblSource.java b/src/jalview/ws/dbsources/EmblSource.java

index 5e54f1b..84726f9 100644 (file)
--- a/src/jalview/ws/dbsources/EmblSource.java
+++ b/src/jalview/ws/dbsources/EmblSource.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ws/dbsources/EmblXmlSource.java b/src/jalview/ws/dbsources/EmblXmlSource.java

index 89d9f05..b78b904 100644 (file)
--- a/src/jalview/ws/dbsources/EmblXmlSource.java
+++ b/src/jalview/ws/dbsources/EmblXmlSource.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ws/dbsources/GeneDbSource.java b/src/jalview/ws/dbsources/GeneDbSource.java

index 77ff992..07c7252 100644 (file)
--- a/src/jalview/ws/dbsources/GeneDbSource.java
+++ b/src/jalview/ws/dbsources/GeneDbSource.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ws/dbsources/Pdb.java b/src/jalview/ws/dbsources/Pdb.java

index c54822e..b28ce8a 100644 (file)
--- a/src/jalview/ws/dbsources/Pdb.java
+++ b/src/jalview/ws/dbsources/Pdb.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ws/dbsources/Pfam.java b/src/jalview/ws/dbsources/Pfam.java

index 3f0ec11..0643267 100644 (file)
--- a/src/jalview/ws/dbsources/Pfam.java
+++ b/src/jalview/ws/dbsources/Pfam.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ws/dbsources/PfamFull.java b/src/jalview/ws/dbsources/PfamFull.java

index 162f1fa..a0526e2 100644 (file)
--- a/src/jalview/ws/dbsources/PfamFull.java
+++ b/src/jalview/ws/dbsources/PfamFull.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ws/dbsources/PfamSeed.java b/src/jalview/ws/dbsources/PfamSeed.java

index 71667ed..a07101a 100644 (file)
--- a/src/jalview/ws/dbsources/PfamSeed.java
+++ b/src/jalview/ws/dbsources/PfamSeed.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ws/dbsources/Rfam.java b/src/jalview/ws/dbsources/Rfam.java

index f5d77ab..20986e4 100644 (file)
--- a/src/jalview/ws/dbsources/Rfam.java
+++ b/src/jalview/ws/dbsources/Rfam.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ws/dbsources/RfamFull.java b/src/jalview/ws/dbsources/RfamFull.java

index 1eb3215..9477963 100644 (file)
--- a/src/jalview/ws/dbsources/RfamFull.java
+++ b/src/jalview/ws/dbsources/RfamFull.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ws/dbsources/RfamSeed.java b/src/jalview/ws/dbsources/RfamSeed.java

index 47ba60d..91a8540 100644 (file)
--- a/src/jalview/ws/dbsources/RfamSeed.java
+++ b/src/jalview/ws/dbsources/RfamSeed.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ws/dbsources/Uniprot.java b/src/jalview/ws/dbsources/Uniprot.java

index 1deb272..df8f1aa 100644 (file)
--- a/src/jalview/ws/dbsources/Uniprot.java
+++ b/src/jalview/ws/dbsources/Uniprot.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ws/dbsources/UnprotName.java b/src/jalview/ws/dbsources/UnprotName.java

index c45357c..c900866 100644 (file)
--- a/src/jalview/ws/dbsources/UnprotName.java
+++ b/src/jalview/ws/dbsources/UnprotName.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ws/dbsources/Xfam.java b/src/jalview/ws/dbsources/Xfam.java

index 756ca1b..dd2d155 100644 (file)
--- a/src/jalview/ws/dbsources/Xfam.java
+++ b/src/jalview/ws/dbsources/Xfam.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ws/dbsources/das/api/DasSourceRegistryI.java b/src/jalview/ws/dbsources/das/api/DasSourceRegistryI.java

index 7bd5bca..79e333e 100644 (file)
--- a/src/jalview/ws/dbsources/das/api/DasSourceRegistryI.java
+++ b/src/jalview/ws/dbsources/das/api/DasSourceRegistryI.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ws/dbsources/das/api/jalviewSourceI.java b/src/jalview/ws/dbsources/das/api/jalviewSourceI.java

index d23a128..009d64c 100644 (file)
--- a/src/jalview/ws/dbsources/das/api/jalviewSourceI.java
+++ b/src/jalview/ws/dbsources/das/api/jalviewSourceI.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ws/dbsources/das/datamodel/DasSequenceSource.java b/src/jalview/ws/dbsources/das/datamodel/DasSequenceSource.java

index 980dc81..1732734 100644 (file)
--- a/src/jalview/ws/dbsources/das/datamodel/DasSequenceSource.java
+++ b/src/jalview/ws/dbsources/das/datamodel/DasSequenceSource.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ws/dbsources/das/datamodel/DasSourceRegistry.java b/src/jalview/ws/dbsources/das/datamodel/DasSourceRegistry.java

index 04a1b60..98140d7 100644 (file)
--- a/src/jalview/ws/dbsources/das/datamodel/DasSourceRegistry.java
+++ b/src/jalview/ws/dbsources/das/datamodel/DasSourceRegistry.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ws/dbsources/das/datamodel/JalviewSource.java b/src/jalview/ws/dbsources/das/datamodel/JalviewSource.java

index b48616b..0733452 100644 (file)
--- a/src/jalview/ws/dbsources/das/datamodel/JalviewSource.java
+++ b/src/jalview/ws/dbsources/das/datamodel/JalviewSource.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ws/ebi/EBIFetchClient.java b/src/jalview/ws/ebi/EBIFetchClient.java

index 074b76c..e441243 100644 (file)
--- a/src/jalview/ws/ebi/EBIFetchClient.java
+++ b/src/jalview/ws/ebi/EBIFetchClient.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ws/io/mime/HttpContentHandler.java b/src/jalview/ws/io/mime/HttpContentHandler.java

index 72c858a..b63dca7 100644 (file)
--- a/src/jalview/ws/io/mime/HttpContentHandler.java
+++ b/src/jalview/ws/io/mime/HttpContentHandler.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ws/io/mime/JalviewMimeContentHandler.java b/src/jalview/ws/io/mime/JalviewMimeContentHandler.java

index 1b5965c..f807e54 100644 (file)
--- a/src/jalview/ws/io/mime/JalviewMimeContentHandler.java
+++ b/src/jalview/ws/io/mime/JalviewMimeContentHandler.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ws/io/mime/MimeTypes.java b/src/jalview/ws/io/mime/MimeTypes.java

index 6c12b02..8a17015 100644 (file)
--- a/src/jalview/ws/io/mime/MimeTypes.java
+++ b/src/jalview/ws/io/mime/MimeTypes.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ws/jws1/Discoverer.java b/src/jalview/ws/jws1/Discoverer.java

index 48ee9af..cdd9247 100644 (file)
--- a/src/jalview/ws/jws1/Discoverer.java
+++ b/src/jalview/ws/jws1/Discoverer.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ws/jws1/JPredClient.java b/src/jalview/ws/jws1/JPredClient.java

index 4358fac..e1a9e94 100644 (file)
--- a/src/jalview/ws/jws1/JPredClient.java
+++ b/src/jalview/ws/jws1/JPredClient.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ws/jws1/JPredThread.java b/src/jalview/ws/jws1/JPredThread.java

index 509e020..4fcba31 100644 (file)
--- a/src/jalview/ws/jws1/JPredThread.java
+++ b/src/jalview/ws/jws1/JPredThread.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ws/jws1/JWS1Thread.java b/src/jalview/ws/jws1/JWS1Thread.java

index 4be4f83..83c345e 100644 (file)
--- a/src/jalview/ws/jws1/JWS1Thread.java
+++ b/src/jalview/ws/jws1/JWS1Thread.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ws/jws1/MsaWSClient.java b/src/jalview/ws/jws1/MsaWSClient.java

index 270b95c..91374f1 100644 (file)
--- a/src/jalview/ws/jws1/MsaWSClient.java
+++ b/src/jalview/ws/jws1/MsaWSClient.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ws/jws1/MsaWSThread.java b/src/jalview/ws/jws1/MsaWSThread.java

index 168a808..3807a26 100644 (file)
--- a/src/jalview/ws/jws1/MsaWSThread.java
+++ b/src/jalview/ws/jws1/MsaWSThread.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ws/jws1/SeqSearchWSClient.java b/src/jalview/ws/jws1/SeqSearchWSClient.java

index 7d3976d..ed4f968 100644 (file)
--- a/src/jalview/ws/jws1/SeqSearchWSClient.java
+++ b/src/jalview/ws/jws1/SeqSearchWSClient.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ws/jws1/SeqSearchWSThread.java b/src/jalview/ws/jws1/SeqSearchWSThread.java

index 108a586..fce61ce 100644 (file)
--- a/src/jalview/ws/jws1/SeqSearchWSThread.java
+++ b/src/jalview/ws/jws1/SeqSearchWSThread.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ws/jws1/WS1Client.java b/src/jalview/ws/jws1/WS1Client.java

index 11e299a..51c06a8 100644 (file)
--- a/src/jalview/ws/jws1/WS1Client.java
+++ b/src/jalview/ws/jws1/WS1Client.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ws/jws1/WSJob.java b/src/jalview/ws/jws1/WSJob.java

index e25f0a7..a9b5b9e 100644 (file)
--- a/src/jalview/ws/jws1/WSJob.java
+++ b/src/jalview/ws/jws1/WSJob.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ws/jws2/AAConClient.java b/src/jalview/ws/jws2/AAConClient.java

index aba9222..a5cfe4a 100644 (file)
--- a/src/jalview/ws/jws2/AAConClient.java
+++ b/src/jalview/ws/jws2/AAConClient.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ws/jws2/AADisorderClient.java b/src/jalview/ws/jws2/AADisorderClient.java

index e5a39a7..79df6fb 100644 (file)
--- a/src/jalview/ws/jws2/AADisorderClient.java
+++ b/src/jalview/ws/jws2/AADisorderClient.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ws/jws2/AWS2Thread.java b/src/jalview/ws/jws2/AWS2Thread.java

index a98da76..1482a9e 100644 (file)
--- a/src/jalview/ws/jws2/AWS2Thread.java
+++ b/src/jalview/ws/jws2/AWS2Thread.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ws/jws2/JWs2Job.java b/src/jalview/ws/jws2/JWs2Job.java

index 23e131b..683c58c 100644 (file)
--- a/src/jalview/ws/jws2/JWs2Job.java
+++ b/src/jalview/ws/jws2/JWs2Job.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ws/jws2/JabaParamStore.java b/src/jalview/ws/jws2/JabaParamStore.java

index 7ce1115..225360e 100644 (file)
--- a/src/jalview/ws/jws2/JabaParamStore.java
+++ b/src/jalview/ws/jws2/JabaParamStore.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ws/jws2/JabaPreset.java b/src/jalview/ws/jws2/JabaPreset.java

index 5df106d..b4aef91 100644 (file)
--- a/src/jalview/ws/jws2/JabaPreset.java
+++ b/src/jalview/ws/jws2/JabaPreset.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ws/jws2/JabaWsServerQuery.java b/src/jalview/ws/jws2/JabaWsServerQuery.java

index 7248d7c..f3b8de5 100644 (file)
--- a/src/jalview/ws/jws2/JabaWsServerQuery.java
+++ b/src/jalview/ws/jws2/JabaWsServerQuery.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ws/jws2/JabawsAlignCalcWorker.java b/src/jalview/ws/jws2/JabawsAlignCalcWorker.java

index 6bfeddf..4fc6bc9 100644 (file)
--- a/src/jalview/ws/jws2/JabawsAlignCalcWorker.java
+++ b/src/jalview/ws/jws2/JabawsAlignCalcWorker.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ws/jws2/Jws2Client.java b/src/jalview/ws/jws2/Jws2Client.java

index fa43e7c..a5c1b5d 100644 (file)
--- a/src/jalview/ws/jws2/Jws2Client.java
+++ b/src/jalview/ws/jws2/Jws2Client.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ws/jws2/Jws2Discoverer.java b/src/jalview/ws/jws2/Jws2Discoverer.java

index 66179a0..a597fd7 100644 (file)
--- a/src/jalview/ws/jws2/Jws2Discoverer.java
+++ b/src/jalview/ws/jws2/Jws2Discoverer.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ws/jws2/MsaWSClient.java b/src/jalview/ws/jws2/MsaWSClient.java

index 7bc0ece..19a134c 100644 (file)
--- a/src/jalview/ws/jws2/MsaWSClient.java
+++ b/src/jalview/ws/jws2/MsaWSClient.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ws/jws2/MsaWSThread.java b/src/jalview/ws/jws2/MsaWSThread.java

index e5c3752..8f33ec6 100644 (file)
--- a/src/jalview/ws/jws2/MsaWSThread.java
+++ b/src/jalview/ws/jws2/MsaWSThread.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ws/jws2/ParameterUtils.java b/src/jalview/ws/jws2/ParameterUtils.java

index be90458..80aa6c7 100644 (file)
--- a/src/jalview/ws/jws2/ParameterUtils.java
+++ b/src/jalview/ws/jws2/ParameterUtils.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ws/jws2/SequenceAnnotationWSClient.java b/src/jalview/ws/jws2/SequenceAnnotationWSClient.java

index fb5f823..4daf9f1 100644 (file)
--- a/src/jalview/ws/jws2/SequenceAnnotationWSClient.java
+++ b/src/jalview/ws/jws2/SequenceAnnotationWSClient.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ws/jws2/dm/AAConSettings.java b/src/jalview/ws/jws2/dm/AAConSettings.java

index eff2128..5f611b0 100644 (file)
--- a/src/jalview/ws/jws2/dm/AAConSettings.java
+++ b/src/jalview/ws/jws2/dm/AAConSettings.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ws/jws2/dm/JabaOption.java b/src/jalview/ws/jws2/dm/JabaOption.java

index f6202e1..df43df8 100644 (file)
--- a/src/jalview/ws/jws2/dm/JabaOption.java
+++ b/src/jalview/ws/jws2/dm/JabaOption.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ws/jws2/dm/JabaParameter.java b/src/jalview/ws/jws2/dm/JabaParameter.java

index 02cc167..f5c66e1 100644 (file)
--- a/src/jalview/ws/jws2/dm/JabaParameter.java
+++ b/src/jalview/ws/jws2/dm/JabaParameter.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ws/jws2/dm/JabaValueConstrain.java b/src/jalview/ws/jws2/dm/JabaValueConstrain.java

index dd07c9d..5ee4877 100644 (file)
--- a/src/jalview/ws/jws2/dm/JabaValueConstrain.java
+++ b/src/jalview/ws/jws2/dm/JabaValueConstrain.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ws/jws2/dm/JabaWsParamSet.java b/src/jalview/ws/jws2/dm/JabaWsParamSet.java

index 5cd93e6..251a97a 100644 (file)
--- a/src/jalview/ws/jws2/dm/JabaWsParamSet.java
+++ b/src/jalview/ws/jws2/dm/JabaWsParamSet.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ws/jws2/jabaws2/Jws2Instance.java b/src/jalview/ws/jws2/jabaws2/Jws2Instance.java

index f21c29d..502f0f0 100644 (file)
--- a/src/jalview/ws/jws2/jabaws2/Jws2Instance.java
+++ b/src/jalview/ws/jws2/jabaws2/Jws2Instance.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ws/params/ArgumentI.java b/src/jalview/ws/params/ArgumentI.java

index 7d13d8b..4bed1fa 100644 (file)
--- a/src/jalview/ws/params/ArgumentI.java
+++ b/src/jalview/ws/params/ArgumentI.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ws/params/AutoCalcSetting.java b/src/jalview/ws/params/AutoCalcSetting.java

index 1a28326..af08e74 100644 (file)
--- a/src/jalview/ws/params/AutoCalcSetting.java
+++ b/src/jalview/ws/params/AutoCalcSetting.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ws/params/InvalidArgumentException.java b/src/jalview/ws/params/InvalidArgumentException.java

index ac5e135..04e0c10 100644 (file)
--- a/src/jalview/ws/params/InvalidArgumentException.java
+++ b/src/jalview/ws/params/InvalidArgumentException.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ws/params/OptionI.java b/src/jalview/ws/params/OptionI.java

index 2aca4b9..a7c9a65 100644 (file)
--- a/src/jalview/ws/params/OptionI.java
+++ b/src/jalview/ws/params/OptionI.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ws/params/ParamDatastoreI.java b/src/jalview/ws/params/ParamDatastoreI.java

index 3074ad4..0c37f45 100644 (file)
--- a/src/jalview/ws/params/ParamDatastoreI.java
+++ b/src/jalview/ws/params/ParamDatastoreI.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ws/params/ParamManager.java b/src/jalview/ws/params/ParamManager.java

index e067228..e040eaa 100644 (file)
--- a/src/jalview/ws/params/ParamManager.java
+++ b/src/jalview/ws/params/ParamManager.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ws/params/ParameterI.java b/src/jalview/ws/params/ParameterI.java

index 678047c..47f37c4 100644 (file)
--- a/src/jalview/ws/params/ParameterI.java
+++ b/src/jalview/ws/params/ParameterI.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ws/params/ValueConstrainI.java b/src/jalview/ws/params/ValueConstrainI.java

index ed4080b..bc88464 100644 (file)
--- a/src/jalview/ws/params/ValueConstrainI.java
+++ b/src/jalview/ws/params/ValueConstrainI.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ws/params/WsParamSetI.java b/src/jalview/ws/params/WsParamSetI.java

index c1be913..370deef 100644 (file)
--- a/src/jalview/ws/params/WsParamSetI.java
+++ b/src/jalview/ws/params/WsParamSetI.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ws/params/simple/BooleanOption.java b/src/jalview/ws/params/simple/BooleanOption.java

index d4076ff..64d65ac 100644 (file)
--- a/src/jalview/ws/params/simple/BooleanOption.java
+++ b/src/jalview/ws/params/simple/BooleanOption.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ws/params/simple/IntegerParameter.java b/src/jalview/ws/params/simple/IntegerParameter.java

index 94a054b..885aafc 100644 (file)
--- a/src/jalview/ws/params/simple/IntegerParameter.java
+++ b/src/jalview/ws/params/simple/IntegerParameter.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ws/params/simple/Option.java b/src/jalview/ws/params/simple/Option.java

index 0ce9f09..73d6c44 100644 (file)
--- a/src/jalview/ws/params/simple/Option.java
+++ b/src/jalview/ws/params/simple/Option.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ws/params/simple/Parameter.java b/src/jalview/ws/params/simple/Parameter.java

index 40bf6fa..d62e84a 100644 (file)
--- a/src/jalview/ws/params/simple/Parameter.java
+++ b/src/jalview/ws/params/simple/Parameter.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ws/params/simple/StringChoiceParameter.java b/src/jalview/ws/params/simple/StringChoiceParameter.java

index 3f3a3cf..9d10671 100644 (file)
--- a/src/jalview/ws/params/simple/StringChoiceParameter.java
+++ b/src/jalview/ws/params/simple/StringChoiceParameter.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ws/rest/AlignmentProcessor.java b/src/jalview/ws/rest/AlignmentProcessor.java

index df7573b..a9bd26e 100644 (file)
--- a/src/jalview/ws/rest/AlignmentProcessor.java
+++ b/src/jalview/ws/rest/AlignmentProcessor.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ws/rest/HttpResultSet.java b/src/jalview/ws/rest/HttpResultSet.java

index 3654620..7a3a04e 100644 (file)
--- a/src/jalview/ws/rest/HttpResultSet.java
+++ b/src/jalview/ws/rest/HttpResultSet.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ws/rest/InputType.java b/src/jalview/ws/rest/InputType.java

index a0ef868..c2af48c 100644 (file)
--- a/src/jalview/ws/rest/InputType.java
+++ b/src/jalview/ws/rest/InputType.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ws/rest/NoValidInputDataException.java b/src/jalview/ws/rest/NoValidInputDataException.java

index a332c40..1072e6f 100644 (file)
--- a/src/jalview/ws/rest/NoValidInputDataException.java
+++ b/src/jalview/ws/rest/NoValidInputDataException.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ws/rest/RestClient.java b/src/jalview/ws/rest/RestClient.java

index ceb2809..195081b 100644 (file)
--- a/src/jalview/ws/rest/RestClient.java
+++ b/src/jalview/ws/rest/RestClient.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ws/rest/RestJob.java b/src/jalview/ws/rest/RestJob.java

index d41cfc0..02259ca 100644 (file)
--- a/src/jalview/ws/rest/RestJob.java
+++ b/src/jalview/ws/rest/RestJob.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ws/rest/RestJobThread.java b/src/jalview/ws/rest/RestJobThread.java

index 2aa071d..35dd13b 100644 (file)
--- a/src/jalview/ws/rest/RestJobThread.java
+++ b/src/jalview/ws/rest/RestJobThread.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ws/rest/RestServiceDescription.java b/src/jalview/ws/rest/RestServiceDescription.java

index 02c0bbf..a1d8dae 100644 (file)
--- a/src/jalview/ws/rest/RestServiceDescription.java
+++ b/src/jalview/ws/rest/RestServiceDescription.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ws/rest/params/Alignment.java b/src/jalview/ws/rest/params/Alignment.java

index d6af1c4..c2afc14 100644 (file)
--- a/src/jalview/ws/rest/params/Alignment.java
+++ b/src/jalview/ws/rest/params/Alignment.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ws/rest/params/AnnotationFile.java b/src/jalview/ws/rest/params/AnnotationFile.java

index 9aeeb9a..862023e 100644 (file)
--- a/src/jalview/ws/rest/params/AnnotationFile.java
+++ b/src/jalview/ws/rest/params/AnnotationFile.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ws/rest/params/JobConstant.java b/src/jalview/ws/rest/params/JobConstant.java

index 968011c..28b1de0 100644 (file)
--- a/src/jalview/ws/rest/params/JobConstant.java
+++ b/src/jalview/ws/rest/params/JobConstant.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ws/rest/params/SeqGroupIndexVector.java b/src/jalview/ws/rest/params/SeqGroupIndexVector.java

index 87a1d9a..2c4b71a 100644 (file)
--- a/src/jalview/ws/rest/params/SeqGroupIndexVector.java
+++ b/src/jalview/ws/rest/params/SeqGroupIndexVector.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ws/rest/params/SeqIdVector.java b/src/jalview/ws/rest/params/SeqIdVector.java

index 05acb23..d820925 100644 (file)
--- a/src/jalview/ws/rest/params/SeqIdVector.java
+++ b/src/jalview/ws/rest/params/SeqIdVector.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ws/rest/params/SeqVector.java b/src/jalview/ws/rest/params/SeqVector.java

index 8dd5dfd..7bc794b 100644 (file)
--- a/src/jalview/ws/rest/params/SeqVector.java
+++ b/src/jalview/ws/rest/params/SeqVector.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ws/rest/params/Tree.java b/src/jalview/ws/rest/params/Tree.java

index db4ce8b..20f929a 100644 (file)
--- a/src/jalview/ws/rest/params/Tree.java
+++ b/src/jalview/ws/rest/params/Tree.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ws/seqfetcher/ASequenceFetcher.java b/src/jalview/ws/seqfetcher/ASequenceFetcher.java

index 8b63184..f4f734c 100644 (file)
--- a/src/jalview/ws/seqfetcher/ASequenceFetcher.java
+++ b/src/jalview/ws/seqfetcher/ASequenceFetcher.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ws/seqfetcher/DbSourceProxy.java b/src/jalview/ws/seqfetcher/DbSourceProxy.java

index 3a50fb5..da2addc 100644 (file)
--- a/src/jalview/ws/seqfetcher/DbSourceProxy.java
+++ b/src/jalview/ws/seqfetcher/DbSourceProxy.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ws/seqfetcher/DbSourceProxyImpl.java b/src/jalview/ws/seqfetcher/DbSourceProxyImpl.java

index bdd21fd..be8424c 100644 (file)
--- a/src/jalview/ws/seqfetcher/DbSourceProxyImpl.java
+++ b/src/jalview/ws/seqfetcher/DbSourceProxyImpl.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/uk/ac/ebi/picr/model/CrossReference.java b/src/uk/ac/ebi/picr/model/CrossReference.java

index 2469db5..826e6c1 100644 (file)
--- a/src/uk/ac/ebi/picr/model/CrossReference.java
+++ b/src/uk/ac/ebi/picr/model/CrossReference.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/uk/ac/ebi/picr/model/CrossReference_Helper.java b/src/uk/ac/ebi/picr/model/CrossReference_Helper.java

index 65a1092..0028110 100644 (file)
--- a/src/uk/ac/ebi/picr/model/CrossReference_Helper.java
+++ b/src/uk/ac/ebi/picr/model/CrossReference_Helper.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/uk/ac/ebi/picr/model/UPEntry.java b/src/uk/ac/ebi/picr/model/UPEntry.java

index 8a82575..d16ac1d 100644 (file)
--- a/src/uk/ac/ebi/picr/model/UPEntry.java
+++ b/src/uk/ac/ebi/picr/model/UPEntry.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/uk/ac/ebi/picr/model/UPEntry_Helper.java b/src/uk/ac/ebi/picr/model/UPEntry_Helper.java

index 54da470..86bf4fa 100644 (file)
--- a/src/uk/ac/ebi/picr/model/UPEntry_Helper.java
+++ b/src/uk/ac/ebi/picr/model/UPEntry_Helper.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/uk/ac/ebi/www/Data.java b/src/uk/ac/ebi/www/Data.java

index 29206cc..ff955f0 100755 (executable)
--- a/src/uk/ac/ebi/www/Data.java
+++ b/src/uk/ac/ebi/www/Data.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/uk/ac/ebi/www/InputParams.java b/src/uk/ac/ebi/www/InputParams.java

index a6a57f5..ece8614 100755 (executable)
--- a/src/uk/ac/ebi/www/InputParams.java
+++ b/src/uk/ac/ebi/www/InputParams.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/uk/ac/ebi/www/WSFile.java b/src/uk/ac/ebi/www/WSFile.java

index 1cb0841..7ffd8e6 100755 (executable)
--- a/src/uk/ac/ebi/www/WSFile.java
+++ b/src/uk/ac/ebi/www/WSFile.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/uk/ac/ebi/www/WSWUBlast.java b/src/uk/ac/ebi/www/WSWUBlast.java

index 9b891a8..63cc556 100755 (executable)
--- a/src/uk/ac/ebi/www/WSWUBlast.java
+++ b/src/uk/ac/ebi/www/WSWUBlast.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/uk/ac/ebi/www/WSWUBlastService.java b/src/uk/ac/ebi/www/WSWUBlastService.java

index 5bb0475..07bd1be 100755 (executable)
--- a/src/uk/ac/ebi/www/WSWUBlastService.java
+++ b/src/uk/ac/ebi/www/WSWUBlastService.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/uk/ac/ebi/www/WSWUBlastServiceLocator.java b/src/uk/ac/ebi/www/WSWUBlastServiceLocator.java

index 5e5ba13..d8f7954 100755 (executable)
--- a/src/uk/ac/ebi/www/WSWUBlastServiceLocator.java
+++ b/src/uk/ac/ebi/www/WSWUBlastServiceLocator.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/uk/ac/ebi/www/WSWUBlastSoapBindingStub.java b/src/uk/ac/ebi/www/WSWUBlastSoapBindingStub.java

index 5059842..22d0ef7 100755 (executable)
--- a/src/uk/ac/ebi/www/WSWUBlastSoapBindingStub.java
+++ b/src/uk/ac/ebi/www/WSWUBlastSoapBindingStub.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/uk/ac/ebi/www/picr/AccessionMappingService/AccessionMapperBindingStub.java b/src/uk/ac/ebi/www/picr/AccessionMappingService/AccessionMapperBindingStub.java

index 235508b..6dd80c4 100644 (file)
--- a/src/uk/ac/ebi/www/picr/AccessionMappingService/AccessionMapperBindingStub.java
+++ b/src/uk/ac/ebi/www/picr/AccessionMappingService/AccessionMapperBindingStub.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/uk/ac/ebi/www/picr/AccessionMappingService/AccessionMapperInterface.java b/src/uk/ac/ebi/www/picr/AccessionMappingService/AccessionMapperInterface.java

index b199ee8..45fad1a 100644 (file)
--- a/src/uk/ac/ebi/www/picr/AccessionMappingService/AccessionMapperInterface.java
+++ b/src/uk/ac/ebi/www/picr/AccessionMappingService/AccessionMapperInterface.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/uk/ac/ebi/www/picr/AccessionMappingService/AccessionMapperService.java b/src/uk/ac/ebi/www/picr/AccessionMappingService/AccessionMapperService.java

index 02ea047..88d4e36 100644 (file)
--- a/src/uk/ac/ebi/www/picr/AccessionMappingService/AccessionMapperService.java
+++ b/src/uk/ac/ebi/www/picr/AccessionMappingService/AccessionMapperService.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/uk/ac/ebi/www/picr/AccessionMappingService/AccessionMapperServiceLocator.java b/src/uk/ac/ebi/www/picr/AccessionMappingService/AccessionMapperServiceLocator.java

index 1336c78..147c345 100644 (file)
--- a/src/uk/ac/ebi/www/picr/AccessionMappingService/AccessionMapperServiceLocator.java
+++ b/src/uk/ac/ebi/www/picr/AccessionMappingService/AccessionMapperServiceLocator.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/vamsas/IMsaWS.java b/src/vamsas/IMsaWS.java

index 9c05ef5..c15172b 100755 (executable)
--- a/src/vamsas/IMsaWS.java
+++ b/src/vamsas/IMsaWS.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/vamsas/objects/simple/Alignment.java b/src/vamsas/objects/simple/Alignment.java

index e03b768..97611d5 100755 (executable)
--- a/src/vamsas/objects/simple/Alignment.java
+++ b/src/vamsas/objects/simple/Alignment.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/vamsas/objects/simple/Alignment_Helper.java b/src/vamsas/objects/simple/Alignment_Helper.java

index 0c9e127..96dcc15 100755 (executable)
--- a/src/vamsas/objects/simple/Alignment_Helper.java
+++ b/src/vamsas/objects/simple/Alignment_Helper.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/vamsas/objects/simple/JpredResult.java b/src/vamsas/objects/simple/JpredResult.java

index a6f3877..9704d3b 100755 (executable)
--- a/src/vamsas/objects/simple/JpredResult.java
+++ b/src/vamsas/objects/simple/JpredResult.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/vamsas/objects/simple/JpredResult_Helper.java b/src/vamsas/objects/simple/JpredResult_Helper.java

index b2baf3f..01ea968 100755 (executable)
--- a/src/vamsas/objects/simple/JpredResult_Helper.java
+++ b/src/vamsas/objects/simple/JpredResult_Helper.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/vamsas/objects/simple/MsaResult.java b/src/vamsas/objects/simple/MsaResult.java

index 939c4c4..af68411 100755 (executable)
--- a/src/vamsas/objects/simple/MsaResult.java
+++ b/src/vamsas/objects/simple/MsaResult.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/vamsas/objects/simple/MsaResult_Helper.java b/src/vamsas/objects/simple/MsaResult_Helper.java

index c9f5ea1..462aefa 100755 (executable)
--- a/src/vamsas/objects/simple/MsaResult_Helper.java
+++ b/src/vamsas/objects/simple/MsaResult_Helper.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/vamsas/objects/simple/Msfalignment.java b/src/vamsas/objects/simple/Msfalignment.java

index 5aaf0db..139c18f 100755 (executable)
--- a/src/vamsas/objects/simple/Msfalignment.java
+++ b/src/vamsas/objects/simple/Msfalignment.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/vamsas/objects/simple/Msfalignment_Helper.java b/src/vamsas/objects/simple/Msfalignment_Helper.java

index c50c5be..70cca01 100755 (executable)
--- a/src/vamsas/objects/simple/Msfalignment_Helper.java
+++ b/src/vamsas/objects/simple/Msfalignment_Helper.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/vamsas/objects/simple/Object.java b/src/vamsas/objects/simple/Object.java

index 5e491d6..8ddf3f3 100755 (executable)
--- a/src/vamsas/objects/simple/Object.java
+++ b/src/vamsas/objects/simple/Object.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/vamsas/objects/simple/Object_Helper.java b/src/vamsas/objects/simple/Object_Helper.java

index a45718b..9b2199e 100755 (executable)
--- a/src/vamsas/objects/simple/Object_Helper.java
+++ b/src/vamsas/objects/simple/Object_Helper.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/vamsas/objects/simple/Result.java b/src/vamsas/objects/simple/Result.java

index d0ac976..0695155 100755 (executable)
--- a/src/vamsas/objects/simple/Result.java
+++ b/src/vamsas/objects/simple/Result.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/vamsas/objects/simple/Result_Helper.java b/src/vamsas/objects/simple/Result_Helper.java

index d2d4960..453fc39 100755 (executable)
--- a/src/vamsas/objects/simple/Result_Helper.java
+++ b/src/vamsas/objects/simple/Result_Helper.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/vamsas/objects/simple/Secstructpred.java b/src/vamsas/objects/simple/Secstructpred.java

index 1a14efb..d75d0e1 100755 (executable)
--- a/src/vamsas/objects/simple/Secstructpred.java
+++ b/src/vamsas/objects/simple/Secstructpred.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/vamsas/objects/simple/Secstructpred_Helper.java b/src/vamsas/objects/simple/Secstructpred_Helper.java

index b7f059b..ddc9097 100755 (executable)
--- a/src/vamsas/objects/simple/Secstructpred_Helper.java
+++ b/src/vamsas/objects/simple/Secstructpred_Helper.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/vamsas/objects/simple/SeqSearchResult.java b/src/vamsas/objects/simple/SeqSearchResult.java

index 058830d..3b23aba 100644 (file)
--- a/src/vamsas/objects/simple/SeqSearchResult.java
+++ b/src/vamsas/objects/simple/SeqSearchResult.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/vamsas/objects/simple/SeqSearchResult_Helper.java b/src/vamsas/objects/simple/SeqSearchResult_Helper.java

index 7076c33..ee5e0bc 100644 (file)
--- a/src/vamsas/objects/simple/SeqSearchResult_Helper.java
+++ b/src/vamsas/objects/simple/SeqSearchResult_Helper.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/vamsas/objects/simple/Sequence.java b/src/vamsas/objects/simple/Sequence.java

index 2f6d742..515b8ed 100755 (executable)
--- a/src/vamsas/objects/simple/Sequence.java
+++ b/src/vamsas/objects/simple/Sequence.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/vamsas/objects/simple/SequenceSet.java b/src/vamsas/objects/simple/SequenceSet.java

index 9aaca58..733e9d3 100755 (executable)
--- a/src/vamsas/objects/simple/SequenceSet.java
+++ b/src/vamsas/objects/simple/SequenceSet.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/vamsas/objects/simple/SequenceSet_Helper.java b/src/vamsas/objects/simple/SequenceSet_Helper.java

index 181be98..2ea3d3b 100755 (executable)
--- a/src/vamsas/objects/simple/SequenceSet_Helper.java
+++ b/src/vamsas/objects/simple/SequenceSet_Helper.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/vamsas/objects/simple/Sequence_Helper.java b/src/vamsas/objects/simple/Sequence_Helper.java

index 9f56351..6e82314 100755 (executable)
--- a/src/vamsas/objects/simple/Sequence_Helper.java
+++ b/src/vamsas/objects/simple/Sequence_Helper.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/vamsas/objects/simple/WsJobId.java b/src/vamsas/objects/simple/WsJobId.java

index 476df91..df0a231 100755 (executable)
--- a/src/vamsas/objects/simple/WsJobId.java
+++ b/src/vamsas/objects/simple/WsJobId.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/vamsas/objects/simple/WsJobId_Helper.java b/src/vamsas/objects/simple/WsJobId_Helper.java

index 5d9f216..aedc3e1 100755 (executable)
--- a/src/vamsas/objects/simple/WsJobId_Helper.java
+++ b/src/vamsas/objects/simple/WsJobId_Helper.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/test/jalview/analysis/DnaTranslation.java b/test/jalview/analysis/DnaTranslation.java

index da2fac4..74ec461 100644 (file)
--- a/test/jalview/analysis/DnaTranslation.java
+++ b/test/jalview/analysis/DnaTranslation.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/utils/InstallAnywhere/jalview_buildinstaller.xml b/utils/InstallAnywhere/jalview_buildinstaller.xml

index ee21e74..de1e865 100644 (file)
--- a/utils/InstallAnywhere/jalview_buildinstaller.xml
+++ b/utils/InstallAnywhere/jalview_buildinstaller.xml
@@ -1,6 +1,6 @@
  <?xml version="1.0"?>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/utils/eclipse/JalviewCodeStyle.xml b/utils/eclipse/JalviewCodeStyle.xml

index a73f116..fc961f7 100644 (file)
--- a/utils/eclipse/JalviewCodeStyle.xml
+++ b/utils/eclipse/JalviewCodeStyle.xml
@@ -1,6 +1,6 @@
  <?xml version="1.0" encoding="UTF-8" standalone="no"?>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/utils/getJavaVersion.java b/utils/getJavaVersion.java

index f3b12d4..c751a9a 100644 (file)
--- a/utils/getJavaVersion.java
+++ b/utils/getJavaVersion.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/utils/gff2annot.pl b/utils/gff2annot.pl

index 6d90f70..40fe25f 100755 (executable)
--- a/utils/gff2annot.pl
+++ b/utils/gff2annot.pl
@@ -1,6 +1,6 @@
  #!/usr/bin/perl
  ##
-# Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+# Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
  # Copyright (C) 2014 The Jalview Authors
  # 
  # This file is part of Jalview.
diff --git a/utils/help2Website.java b/utils/help2Website.java

index e2e79ac..fceb05d 100755 (executable)
--- a/utils/help2Website.java
+++ b/utils/help2Website.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/utils/jalopy/docs/acknowledge.html b/utils/jalopy/docs/acknowledge.html

index 71ff9e4..db14ec3 100755 (executable)
--- a/utils/jalopy/docs/acknowledge.html
+++ b/utils/jalopy/docs/acknowledge.html
@@ -1,5 +1,5 @@
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/utils/jalopy/docs/bi01.html b/utils/jalopy/docs/bi01.html

index 24a6ec4..a5571db 100755 (executable)
--- a/utils/jalopy/docs/bi01.html
+++ b/utils/jalopy/docs/bi01.html
@@ -1,5 +1,5 @@
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/utils/jalopy/docs/build.html b/utils/jalopy/docs/build.html

index b4bc167..b29c174 100755 (executable)
--- a/utils/jalopy/docs/build.html
+++ b/utils/jalopy/docs/build.html
@@ -1,5 +1,5 @@
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/utils/jalopy/docs/comments.html b/utils/jalopy/docs/comments.html

index 5eceab4..9862001 100755 (executable)
--- a/utils/jalopy/docs/comments.html
+++ b/utils/jalopy/docs/comments.html
@@ -1,5 +1,5 @@
  <!--
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- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/utils/jalopy/docs/plugin-console-license.html b/utils/jalopy/docs/plugin-console-license.html

index 757b901..8b69b6c 100755 (executable)
--- a/utils/jalopy/docs/plugin-console-license.html
+++ b/utils/jalopy/docs/plugin-console-license.html
@@ -1,5 +1,5 @@
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/utils/jalopy/docs/plugin-console-usage.html b/utils/jalopy/docs/plugin-console-usage.html

index f8c0722..34bb483 100755 (executable)
--- a/utils/jalopy/docs/plugin-console-usage.html
+++ b/utils/jalopy/docs/plugin-console-usage.html
@@ -1,5 +1,5 @@
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/utils/jalopy/docs/plugin-console.html b/utils/jalopy/docs/plugin-console.html

index f8275cb..0bcb578 100755 (executable)
--- a/utils/jalopy/docs/plugin-console.html
+++ b/utils/jalopy/docs/plugin-console.html
@@ -1,5 +1,5 @@
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/utils/jalopy/docs/plugin-eclipse-integration.html b/utils/jalopy/docs/plugin-eclipse-integration.html

index d7e3a18..3eb0eaa 100755 (executable)
--- a/utils/jalopy/docs/plugin-eclipse-integration.html
+++ b/utils/jalopy/docs/plugin-eclipse-integration.html
@@ -1,5 +1,5 @@
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/utils/jalopy/docs/plugin-eclipse-license.html b/utils/jalopy/docs/plugin-eclipse-license.html

index 8c5676e..554f2da 100755 (executable)
--- a/utils/jalopy/docs/plugin-eclipse-license.html
+++ b/utils/jalopy/docs/plugin-eclipse-license.html
@@ -1,5 +1,5 @@
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/utils/jalopy/docs/plugin-eclipse.html b/utils/jalopy/docs/plugin-eclipse.html

index 8ef0d4e..bfb6d73 100755 (executable)
--- a/utils/jalopy/docs/plugin-eclipse.html
+++ b/utils/jalopy/docs/plugin-eclipse.html
@@ -1,5 +1,5 @@
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/utils/jalopy/docs/plugin-jbuilder-integration.html b/utils/jalopy/docs/plugin-jbuilder-integration.html

index 0fca529..a5336e4 100755 (executable)
--- a/utils/jalopy/docs/plugin-jbuilder-integration.html
+++ b/utils/jalopy/docs/plugin-jbuilder-integration.html
@@ -1,5 +1,5 @@
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/utils/jalopy/docs/plugin-jbuilder-license.html b/utils/jalopy/docs/plugin-jbuilder-license.html

index 24771fa..233e072 100755 (executable)
--- a/utils/jalopy/docs/plugin-jbuilder-license.html
+++ b/utils/jalopy/docs/plugin-jbuilder-license.html
@@ -1,5 +1,5 @@
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/utils/jalopy/docs/plugin-jbuilder.html b/utils/jalopy/docs/plugin-jbuilder.html

index ad854be..5ed1f54 100755 (executable)
--- a/utils/jalopy/docs/plugin-jbuilder.html
+++ b/utils/jalopy/docs/plugin-jbuilder.html
@@ -1,5 +1,5 @@
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/utils/jalopy/docs/plugin-jdev-integration.html b/utils/jalopy/docs/plugin-jdev-integration.html

index 5708a8a..b4c4106 100755 (executable)
--- a/utils/jalopy/docs/plugin-jdev-integration.html
+++ b/utils/jalopy/docs/plugin-jdev-integration.html
@@ -1,5 +1,5 @@
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/utils/jalopy/docs/plugin-jdev-license.html b/utils/jalopy/docs/plugin-jdev-license.html

index acaa975..98c1112 100755 (executable)
--- a/utils/jalopy/docs/plugin-jdev-license.html
+++ b/utils/jalopy/docs/plugin-jdev-license.html
@@ -1,5 +1,5 @@
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/utils/jalopy/docs/plugin-jdev.html b/utils/jalopy/docs/plugin-jdev.html

index aece616..9c47953 100755 (executable)
--- a/utils/jalopy/docs/plugin-jdev.html
+++ b/utils/jalopy/docs/plugin-jdev.html
@@ -1,5 +1,5 @@
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/utils/jalopy/docs/plugin-jedit-integration.html b/utils/jalopy/docs/plugin-jedit-integration.html

index 91bb923..02f4ccc 100755 (executable)
--- a/utils/jalopy/docs/plugin-jedit-integration.html
+++ b/utils/jalopy/docs/plugin-jedit-integration.html
@@ -1,5 +1,5 @@
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/utils/jalopy/docs/plugin-jedit-license.html b/utils/jalopy/docs/plugin-jedit-license.html

index a376cdb..a805455 100755 (executable)
--- a/utils/jalopy/docs/plugin-jedit-license.html
+++ b/utils/jalopy/docs/plugin-jedit-license.html
@@ -1,5 +1,5 @@
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/utils/jalopy/docs/plugin-jedit.html b/utils/jalopy/docs/plugin-jedit.html

index ced3833..b225a1d 100755 (executable)
--- a/utils/jalopy/docs/plugin-jedit.html
+++ b/utils/jalopy/docs/plugin-jedit.html
@@ -1,5 +1,5 @@
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/utils/jalopy/docs/plugin-netbeans-integration.html b/utils/jalopy/docs/plugin-netbeans-integration.html

index 983270d..ccbb9e0 100755 (executable)
--- a/utils/jalopy/docs/plugin-netbeans-integration.html
+++ b/utils/jalopy/docs/plugin-netbeans-integration.html
@@ -1,5 +1,5 @@
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/utils/jalopy/docs/plugin-netbeans-license.html b/utils/jalopy/docs/plugin-netbeans-license.html

index c0a0c5a..d156392 100755 (executable)
--- a/utils/jalopy/docs/plugin-netbeans-license.html
+++ b/utils/jalopy/docs/plugin-netbeans-license.html
@@ -1,5 +1,5 @@
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/utils/jalopy/docs/plugin-netbeans.html b/utils/jalopy/docs/plugin-netbeans.html

index e653198..c85d900 100755 (executable)
--- a/utils/jalopy/docs/plugin-netbeans.html
+++ b/utils/jalopy/docs/plugin-netbeans.html
@@ -1,5 +1,5 @@
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/utils/jalopy/docs/plugins.html b/utils/jalopy/docs/plugins.html

index 7aae9b8..f079aa4 100755 (executable)
--- a/utils/jalopy/docs/plugins.html
+++ b/utils/jalopy/docs/plugins.html
@@ -1,5 +1,5 @@
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/utils/jalopy/docs/printer.html b/utils/jalopy/docs/printer.html

index 15f5c78..5ac3f58 100755 (executable)
--- a/utils/jalopy/docs/printer.html
+++ b/utils/jalopy/docs/printer.html
@@ -1,5 +1,5 @@
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/utils/jalopy/docs/project.html b/utils/jalopy/docs/project.html

index ee00723..8d37b04 100755 (executable)
--- a/utils/jalopy/docs/project.html
+++ b/utils/jalopy/docs/project.html
@@ -1,5 +1,5 @@
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/utils/jalopy/docs/separation.html b/utils/jalopy/docs/separation.html

index 20f1a68..ddacfb9 100755 (executable)
--- a/utils/jalopy/docs/separation.html
+++ b/utils/jalopy/docs/separation.html
@@ -1,5 +1,5 @@
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/utils/jalopy/docs/settings.html b/utils/jalopy/docs/settings.html

index 797f5a8..67a232a 100755 (executable)
--- a/utils/jalopy/docs/settings.html
+++ b/utils/jalopy/docs/settings.html
@@ -1,5 +1,5 @@
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/utils/jalopy/docs/site.css b/utils/jalopy/docs/site.css

index 9dffb8e..7a9dee2 100755 (executable)
--- a/utils/jalopy/docs/site.css
+++ b/utils/jalopy/docs/site.css
@@ -1,5 +1,5 @@
  #-------------------------------------------------------------------------------
-# Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+# Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
  # Copyright (C) 2014 The Jalview Authors
  # 
  # This file is part of Jalview.
diff --git a/utils/jalopy/docs/sorting.html b/utils/jalopy/docs/sorting.html

index 50d93d1..994d1b4 100755 (executable)
--- a/utils/jalopy/docs/sorting.html
+++ b/utils/jalopy/docs/sorting.html
@@ -1,5 +1,5 @@
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/utils/jalopy/docs/usage.html b/utils/jalopy/docs/usage.html

index dfa82d3..583592c 100755 (executable)
--- a/utils/jalopy/docs/usage.html
+++ b/utils/jalopy/docs/usage.html
@@ -1,5 +1,5 @@
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/utils/jalopy/docs/whitespace.html b/utils/jalopy/docs/whitespace.html

index 81dfe99..24970ff 100755 (executable)
--- a/utils/jalopy/docs/whitespace.html
+++ b/utils/jalopy/docs/whitespace.html
@@ -1,5 +1,5 @@
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/utils/jalopy/docs/wrapping.html b/utils/jalopy/docs/wrapping.html

index e5dccad..1e9e09f 100755 (executable)
--- a/utils/jalopy/docs/wrapping.html
+++ b/utils/jalopy/docs/wrapping.html
@@ -1,5 +1,5 @@
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/utils/jalopy/readme.html b/utils/jalopy/readme.html

index 3182984..f9e86fb 100755 (executable)
--- a/utils/jalopy/readme.html
+++ b/utils/jalopy/readme.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/utils/jarunsigner.pl b/utils/jarunsigner.pl

index f8a810b..53e0413 100755 (executable)
--- a/utils/jarunsigner.pl
+++ b/utils/jarunsigner.pl
@@ -1,6 +1,6 @@
  #!/usr/bin/perl
  ##
-# Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+# Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
  # Copyright (C) 2014 The Jalview Authors
  # 
  # This file is part of Jalview.
diff --git a/utils/patchGt.pl b/utils/patchGt.pl

index bc9d2da..ef7b4db 100644 (file)
--- a/utils/patchGt.pl
+++ b/utils/patchGt.pl
@@ -1,6 +1,6 @@
  #!/bin/perl
  ##
-# Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+# Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
  # Copyright (C) 2014 The Jalview Authors
  # 
  # This file is part of Jalview.
diff --git a/utils/splitstockholm.pl b/utils/splitstockholm.pl

index 9654057..65e6644 100644 (file)
--- a/utils/splitstockholm.pl
+++ b/utils/splitstockholm.pl
@@ -1,6 +1,6 @@
  #!/usr/bin/perl
  ##
-# Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+# Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
  # Copyright (C) 2014 The Jalview Authors
  # 
  # This file is part of Jalview.
author	Jim Procter <jprocter@dundee.ac.uk>
	Thu, 5 Jun 2014 18:59:25 +0000 (19:59 +0100)
committer	Jim Procter <jprocter@dundee.ac.uk>
	Thu, 5 Jun 2014 18:59:25 +0000 (19:59 +0100)