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JAL-1479 refactored SequenceI interface - changed getDBRef() to getDBRefs() since...
[jalview.git]
/
src
/
jalview
/
io
/
StockholmFile.java
diff --git
a/src/jalview/io/StockholmFile.java
b/src/jalview/io/StockholmFile.java
index
9135b92
..
23c4d21
100644
(file)
--- a/
src/jalview/io/StockholmFile.java
+++ b/
src/jalview/io/StockholmFile.java
@@
-900,18
+900,18
@@
public class StockholmFile extends AlignFile
{
maxid = tmp.length();
}
{
maxid = tmp.length();
}
- if (s[in].getDBRef() != null)
+ if (s[in].getDBRefs() != null)
{
{
- for (int idb = 0; idb < s[in].getDBRef().length; idb++)
+ for (int idb = 0; idb < s[in].getDBRefs().length; idb++)
{
if (dataRef == null)
{
dataRef = new Hashtable();
}
{
if (dataRef == null)
{
dataRef = new Hashtable();
}
- String datAs1 = s[in].getDBRef()[idb].getSource().toString()
+ String datAs1 = s[in].getDBRefs()[idb].getSource().toString()
+ " ; "
+ " ; "
- + s[in].getDBRef()[idb].getAccessionId().toString();
+ + s[in].getDBRefs()[idb].getAccessionId().toString();
dataRef.put(tmp, datAs1);
}
}
dataRef.put(tmp, datAs1);
}
}