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JAL-3438 spotless for 2.11.2.0
[jalview.git]
/
src
/
jalview
/
io
/
vamsas
/
Sequencemapping.java
diff --git
a/src/jalview/io/vamsas/Sequencemapping.java
b/src/jalview/io/vamsas/Sequencemapping.java
index
5a172fe
..
a33390f
100644
(file)
--- a/
src/jalview/io/vamsas/Sequencemapping.java
+++ b/
src/jalview/io/vamsas/Sequencemapping.java
@@
-244,8
+244,7
@@
public class Sequencemapping extends Rangetype
private void update(jalview.datamodel.Mapping mjvmapping,
SequenceMapping sequenceMapping)
{
private void update(jalview.datamodel.Mapping mjvmapping,
SequenceMapping sequenceMapping)
{
- Console.error(
- "Not implemented: Jalview Update Sequence DBRef Mapping");
+ Console.error("Not implemented: Jalview Update Sequence DBRef Mapping");
}
/**
}
/**
@@
-390,28
+389,28
@@
public class Sequencemapping extends Rangetype
{
if (Console.isDebugEnabled())
{
{
if (Console.isDebugEnabled())
{
- Console.debug("Not matching conjugate refs for "
- + from.getName() + " and " + to.getName());
+ Console.debug("Not matching conjugate refs for " + from.getName()
+ + " and " + to.getName());
}
return;
}
if (Console.isDebugEnabled())
{
}
return;
}
if (Console.isDebugEnabled())
{
- Console.debug("Matching conjugate refs for "
- + from.getName() + " and " + to.getName());
+ Console.debug("Matching conjugate refs for " + from.getName()
+ + " and " + to.getName());
}
List<DBRefEntry> fdb = from.getDBRefs();
List<DBRefEntry> tdb = new ArrayList<DBRefEntry>(to.getDBRefs());
int tdblen = to.getDBRefs().size();
}
List<DBRefEntry> fdb = from.getDBRefs();
List<DBRefEntry> tdb = new ArrayList<DBRefEntry>(to.getDBRefs());
int tdblen = to.getDBRefs().size();
-//
-//
-// YOWSER
-//
-// System.arraycopy(to.getDBRefs(), 0, tdb, 0, tdblen);
-//
-//
-//
-//
+ //
+ //
+ // YOWSER
+ //
+ // System.arraycopy(to.getDBRefs(), 0, tdb, 0, tdblen);
+ //
+ //
+ //
+ //
Vector matched = new Vector();
jalview.util.MapList smapI = smap.getInverse();
for (int f = 0, fn = fdb.size(); f < fn; f++)
Vector matched = new Vector();
jalview.util.MapList smapI = smap.getInverse();
for (int f = 0, fn = fdb.size(); f < fn; f++)