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JAL-2360 refactoring for JalviewColourScheme enum,
[jalview.git]
/
src
/
jalview
/
schemes
/
RNAInteractionColourScheme.java
diff --git
a/src/jalview/schemes/RNAInteractionColourScheme.java
b/src/jalview/schemes/RNAInteractionColourScheme.java
index
491d3ea
..
707afd7
100644
(file)
--- a/
src/jalview/schemes/RNAInteractionColourScheme.java
+++ b/
src/jalview/schemes/RNAInteractionColourScheme.java
@@
-1,6
+1,6
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b2)
- * Copyright (C) 2015 The Jalview Authors
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
*
* This file is part of Jalview.
*
*
* This file is part of Jalview.
*
@@
-31,34
+31,17
@@
public class RNAInteractionColourScheme extends ResidueColourScheme
super();
}
super();
}
- /**
- * DOCUMENT ME!
- *
- * @param n
- * DOCUMENT ME!
- *
- * @return DOCUMENT ME!
- */
@Override
public Color findColour(char c)
{
@Override
public Color findColour(char c)
{
- // System.out.println("called"); log.debug
+ // FIXME this is just a copy of NucleotideColourScheme
return colors[ResidueProperties.nucleotideIndex[c]];
}
return colors[ResidueProperties.nucleotideIndex[c]];
}
- /**
- * DOCUMENT ME!
- *
- * @param n
- * DOCUMENT ME!
- * @param j
- * DOCUMENT ME!
- *
- * @return DOCUMENT ME!
- */
@Override
public Color findColour(char c, int j, SequenceI seq)
{
@Override
public Color findColour(char c, int j, SequenceI seq)
{
+ // FIXME this is just a copy of NucleotideColourScheme
Color currentColour;
if ((threshold == 0) || aboveThreshold(c, j))
{
Color currentColour;
if ((threshold == 0) || aboveThreshold(c, j))
{
@@
-82,4
+65,16
@@
public class RNAInteractionColourScheme extends ResidueColourScheme
return currentColour;
}
return currentColour;
}
+
+ @Override
+ public boolean isNucleotideSpecific()
+ {
+ return true;
+ }
+
+ @Override
+ public String getSchemeName()
+ {
+ return "RNA Interaction type";
+ }
}
}