- * @param start - position in seqs
- * @param end - position in seqs
- * @param wcGaps - if true - gaps match any character, if false, do not match anything
- * @param ungappedOnly - if true - only count PID over ungapped columns
+ * @param start
+ * - position in seqs
+ * @param end
+ * - position in seqs
+ * @param wcGaps
+ * - if true - gaps match any character, if false, do not match
+ * anything
+ * @param ungappedOnly
+ * - if true - only count PID over ungapped columns