-/**\r
- * \r
- */\r
-package jalview.ws.dbsources;\r
-\r
-import jalview.ws.seqfetcher.DbSourceProxy;\r
-\r
-/**\r
- * flyweight class specifying retrieval of Full family alignments from PFAM\r
- *\r
- */\r
-public class PfamFull extends Pfam implements DbSourceProxy\r
-{\r
- public PfamFull()\r
- {\r
- super();\r
- }\r
-\r
- /* (non-Javadoc)\r
- * @see jalview.ws.dbsources.Pfam#getPFAMURL()\r
- */\r
- protected String getPFAMURL()\r
- {\r
- return "http://pfam.sanger.ac.uk/family/alignment/download/format?alnType=full&format=stockholm&order=t&case=l&gaps=default&entry=";\r
- }\r
-\r
- /* (non-Javadoc)\r
- * @see jalview.ws.seqfetcher.DbSourceProxy#getDbName()\r
- */\r
- public String getDbName()\r
- {\r
- return "PFAM (Full)";\r
- }\r
- public String getDbSource()\r
- {\r
- return getDbName(); // so we have unique DbSource string.\r
- }\r
- public String getTestQuery()\r
- {\r
- return "PF00535"; // TODO: Pick a better full alignment to retrieve.\r
- }\r
-\r
-}\r
+/*
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
+ * Copyright (C) 2014 The Jalview Authors
+ *
+ * This file is part of Jalview.
+ *
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
+ *
+ * Jalview is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
+ * PURPOSE. See the GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview. If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
+ */
+package jalview.ws.dbsources;
+
+import jalview.ws.seqfetcher.DbSourceProxy;
+
+/**
+ * flyweight class specifying retrieval of Full family alignments from PFAM
+ *
+ */
+public class PfamFull extends Pfam implements DbSourceProxy
+{
+ public PfamFull()
+ {
+ super();
+ }
+
+ /*
+ * (non-Javadoc)
+ *
+ * @see jalview.ws.dbsources.Pfam#getPFAMURL()
+ */
+ protected String getXFAMURL()
+ {
+ return "http://pfam.sanger.ac.uk/family/alignment/download/format?alnType=full&format=stockholm&order=t&case=l&gaps=default&entry=";
+ }
+
+ /*
+ * (non-Javadoc)
+ *
+ * @see jalview.ws.seqfetcher.DbSourceProxy#getDbName()
+ */
+ public String getDbName()
+ {
+ return "PFAM (Full)";
+ }
+
+ public String getDbSource()
+ {
+ return getDbName(); // so we have unique DbSource string.
+ }
+
+ public String getTestQuery()
+ {
+ return "PF03760";
+ }
+
+ public String getDbVersion()
+ {
+ return null;
+ }
+
+ @Override
+ public int getTier()
+ {
+ return 0;
+ }
+}