while (r.hasNext())
{
FileParse fp = new InputStreamParser(r.next(), source.getDataName());
AlignmentI nal = new FormatAdapter().readFromFile(fp, "RNAML");
while (r.hasNext())
{
FileParse fp = new InputStreamParser(r.next(), source.getDataName());
AlignmentI nal = new FormatAdapter().readFromFile(fp, "RNAML");