+/*
+ VARNA is a tool for the automated drawing, visualization and annotation of the secondary structure of RNA, designed as a companion software for web servers and databases.
+ Copyright (C) 2008 Kevin Darty, Alain Denise and Yann Ponty.
+ electronic mail : Yann.Ponty@lri.fr
+ paper mail : LRI, bat 490 Université Paris-Sud 91405 Orsay Cedex France
+
+ This file is part of VARNA version 3.1.
+ VARNA version 3.1 is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License
+ as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
+
+ VARNA version 3.1 is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY;
+ without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
+ See the GNU General Public License for more details.
+
+ You should have received a copy of the GNU General Public License along with VARNA version 3.1.
+ If not, see http://www.gnu.org/licenses.
+ */
+package fr.orsay.lri.varna.components;
+
+import java.awt.Color;
+import java.util.ArrayList;
+
+import javax.swing.table.AbstractTableModel;
+
+import fr.orsay.lri.varna.models.BaseList;
+import fr.orsay.lri.varna.models.VARNAConfig;
+import fr.orsay.lri.varna.models.rna.ModeleBase;
+import fr.orsay.lri.varna.models.rna.ModelBaseStyle;
+
+
+public class BaseTableModel extends AbstractTableModel {
+ /**
+ *
+ */
+ private static final long serialVersionUID = 1L;
+
+ private String[] columnNames = { "Numbers", "Base", "Outline Color", "Inner Color",
+ "Name Color", "Number Color" };
+ private ArrayList<ArrayList<Object>> data = new ArrayList<ArrayList<Object>>();
+ private ArrayList<BaseList> _bases;
+ private boolean _singleBases = true;
+
+ public BaseTableModel(ArrayList<BaseList> bases) {
+ _bases = bases;
+ ArrayList<Object> ligne;
+ for (int i = 0; i < bases.size(); i++) {
+ ligne = new ArrayList<Object>();
+ BaseList bl = bases.get(i);
+ if (bl.size()!=1)
+ {
+ _singleBases = false;
+ }
+ ligne.add(bl.getNumbers());
+ ligne.add(bl.getContents());
+ ligne.add(bl.getAverageOutlineColor());
+ ligne.add(bl.getAverageInnerColor());
+ ligne.add(bl.getAverageNameColor());
+ ligne.add(bl.getAverageNumberColor());
+ this.data.add(ligne);
+ }
+
+ }
+
+ public int getColumnCount() {
+ return columnNames.length;
+ }
+
+ public int getRowCount() {
+ return data.size();
+ }
+
+ public String getColumnName(int col) {
+ return columnNames[col];
+ }
+
+ public Object getValueAt(int row, int col) {
+ return data.get(row).get(col);
+ }
+
+ /*
+ * JTable uses this method to determine the default renderer/ editor for
+ * each cell. If we didn't implement this method, then the last column would
+ * contain text ("true"/"false"), rather than a check box.
+ */
+ @SuppressWarnings("unchecked")
+ public Class getColumnClass(int c) {
+ return getValueAt(0, c).getClass();
+ }
+
+ public boolean isCellEditable(int row, int col) {
+ // Note that the data/cell address is constant,
+ // no matter where the cell appears onscreen.
+ if (col < 1) {
+ return false;
+ } else {
+ return true;
+ }
+ }
+
+ public void setValueAt(Object value, int row, int col) {
+ data.get(row).set(col, value);
+ if (col == 1 && _singleBases)
+ {
+ ModeleBase mb = _bases.get(row).getBases().get(0);
+ mb.setContent(value.toString());
+ }
+ fireTableCellUpdated(row, col);
+
+ }
+}
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