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(parent: 0e684f7) | patch
JAL-3032 adds Java 8 functionality (2/2)
authorhansonr <hansonr@STO24954W.ad.stolaf.edu>
Fri, 20 Jul 2018 16:47:58 +0000 (11:47 -0500)
committerhansonr <hansonr@STO24954W.ad.stolaf.edu>
Fri, 20 Jul 2018 16:47:58 +0000 (11:47 -0500)
commit665d2c2f4c1310e6985b93b7c2c8a8eec2fa9086
treeed2e2d06885e33058a746fbdd7fc2747cf02e5eftree | snapshot
parent0e684f72690bd6532272a39ab6c188a27559fd09commit | diff
JAL-3032 adds Java 8 functionality (2/2)

 the "::" operator
 lambda expressions
 java.util.function.*
 java.util.stream.*
 default methods in interfaces
360 files changed:
.classpath diff | blob | history
build-libjs.xml diff | blob | history
build-site.xml diff | blob | history
libjs/MiGLayout-site.zip diff | blob | history
libjs/VARNA-site.zip diff | blob | history
libjs/jsonsimple-site.zip diff | blob | history
libjs/log4j-site.zip [deleted file] blob | history
src/net/miginfocom/layout/BoundSize.java [deleted file] blob | history
src2/README_SWINGJS.txt diff | blob | history
src2/fr/orsay/lri/varna/README_SWINGJS.txt [new file with mode: 0644] blob
src2/fr/orsay/lri/varna/VARNA.java [new file with mode: 0644] blob
src2/fr/orsay/lri/varna/VARNAPanel.java [new file with mode: 0644] blob
src2/fr/orsay/lri/varna/applications/AlignmentDemo.java [new file with mode: 0644] blob
src2/fr/orsay/lri/varna/applications/BasicINI.java [new file with mode: 0644] blob
src2/fr/orsay/lri/varna/applications/FileNameExtensionFilter.java [new file with mode: 0644] blob
src2/fr/orsay/lri/varna/applications/NussinovDemo.java [new file with mode: 0644] blob
src2/fr/orsay/lri/varna/applications/NussinovDesignDemo.java [new file with mode: 0644] blob
src2/fr/orsay/lri/varna/applications/SecStrConsensus.java [new file with mode: 0644] blob
src2/fr/orsay/lri/varna/applications/SuperpositionDemo.java [new file with mode: 0644] blob
src2/fr/orsay/lri/varna/applications/VARNAConsoleDemo.java [new file with mode: 0644] blob
src2/fr/orsay/lri/varna/applications/VARNAEditor.java [new file with mode: 0644] blob
src2/fr/orsay/lri/varna/applications/VARNAGUI.java [new file with mode: 0644] blob
src2/fr/orsay/lri/varna/applications/VARNAOnlineDemo.java [new file with mode: 0644] blob
src2/fr/orsay/lri/varna/applications/VARNAPrinter.java [new file with mode: 0644] blob
src2/fr/orsay/lri/varna/applications/VARNAcmd.java [new file with mode: 0644] blob
src2/fr/orsay/lri/varna/applications/fragseq/FragSeqAnnotationDataModel.java [new file with mode: 0644] blob
src2/fr/orsay/lri/varna/applications/fragseq/FragSeqCellEditor.java [new file with mode: 0644] blob
src2/fr/orsay/lri/varna/applications/fragseq/FragSeqCellRenderer.java [new file with mode: 0644] blob
src2/fr/orsay/lri/varna/applications/fragseq/FragSeqFileModel.java [new file with mode: 0644] blob
src2/fr/orsay/lri/varna/applications/fragseq/FragSeqGUI.java [new file with mode: 0644] blob
src2/fr/orsay/lri/varna/applications/fragseq/FragSeqModel.java [new file with mode: 0644] blob
src2/fr/orsay/lri/varna/applications/fragseq/FragSeqNode.java [new file with mode: 0644] blob
src2/fr/orsay/lri/varna/applications/fragseq/FragSeqRNASecStrModel.java [new file with mode: 0644] blob
src2/fr/orsay/lri/varna/applications/fragseq/FragSeqTree.java [new file with mode: 0644] blob
src2/fr/orsay/lri/varna/applications/fragseq/FragSeqTreeModel.java [new file with mode: 0644] blob
src2/fr/orsay/lri/varna/applications/fragseq/Watcher.java [new file with mode: 0644] blob
src2/fr/orsay/lri/varna/applications/newGUI/VARNAGUI.java [new file with mode: 0644] blob
src2/fr/orsay/lri/varna/applications/newGUI/VARNAGUICellEditor.java [new file with mode: 0644] blob
src2/fr/orsay/lri/varna/applications/newGUI/VARNAGUIModel.java [new file with mode: 0644] blob
src2/fr/orsay/lri/varna/applications/newGUI/VARNAGUIRenderer.java [new file with mode: 0644] blob
src2/fr/orsay/lri/varna/applications/newGUI/VARNAGUITree.java [new file with mode: 0644] blob
src2/fr/orsay/lri/varna/applications/newGUI/VARNAGUITreeModel.java [new file with mode: 0644] blob
src2/fr/orsay/lri/varna/applications/newGUI/Watcher.java [new file with mode: 0644] blob
src2/fr/orsay/lri/varna/applications/templateEditor/Connection.java [new file with mode: 0644] blob
src2/fr/orsay/lri/varna/applications/templateEditor/Couple.java [new file with mode: 0644] blob
src2/fr/orsay/lri/varna/applications/templateEditor/GraphicalTemplateElement.java [new file with mode: 0644] blob
src2/fr/orsay/lri/varna/applications/templateEditor/Helix.java [new file with mode: 0644] blob
src2/fr/orsay/lri/varna/applications/templateEditor/MouseControler.java [new file with mode: 0644] blob
src2/fr/orsay/lri/varna/applications/templateEditor/TemplateEditor.java [new file with mode: 0644] blob
src2/fr/orsay/lri/varna/applications/templateEditor/TemplateEditorPanelUI.java [new file with mode: 0644] blob
src2/fr/orsay/lri/varna/applications/templateEditor/TemplateEdits.java [new file with mode: 0644] blob
src2/fr/orsay/lri/varna/applications/templateEditor/TemplatePanel.java [new file with mode: 0644] blob
src2/fr/orsay/lri/varna/applications/templateEditor/UnpairedRegion.java [new file with mode: 0644] blob
src2/fr/orsay/lri/varna/components/ActionEditor.java [new file with mode: 0644] blob
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src2/fr/orsay/lri/varna/components/AnnotationTableModel.java [new file with mode: 0644] blob
src2/fr/orsay/lri/varna/components/BaseSpecialColorEditor.java [new file with mode: 0644] blob
src2/fr/orsay/lri/varna/components/BaseTableModel.java [new file with mode: 0644] blob
src2/fr/orsay/lri/varna/components/ColorRenderer.java [new file with mode: 0644] blob
src2/fr/orsay/lri/varna/components/GradientEditorPanel.java [new file with mode: 0644] blob
src2/fr/orsay/lri/varna/components/ReorderableJList.java [new file with mode: 0644] blob
src2/fr/orsay/lri/varna/components/VARNAConsole.java [new file with mode: 0644] blob
src2/fr/orsay/lri/varna/components/ZoomWindow.java [new file with mode: 0644] blob
src2/fr/orsay/lri/varna/controlers/ControleurBPHeightIncrement.java [new file with mode: 0644] blob
src2/fr/orsay/lri/varna/controlers/ControleurBaseSpecialColorEditor.java [new file with mode: 0644] blob
src2/fr/orsay/lri/varna/controlers/ControleurBlinkingThread.java [new file with mode: 0644] blob
src2/fr/orsay/lri/varna/controlers/ControleurBorder.java [new file with mode: 0644] blob
src2/fr/orsay/lri/varna/controlers/ControleurClicMovement.java [new file with mode: 0644] blob
src2/fr/orsay/lri/varna/controlers/ControleurDemoTextField.java [new file with mode: 0644] blob
src2/fr/orsay/lri/varna/controlers/ControleurDraggedMolette.java [new file with mode: 0644] blob
src2/fr/orsay/lri/varna/controlers/ControleurGlobalRescale.java [new file with mode: 0644] blob
src2/fr/orsay/lri/varna/controlers/ControleurGlobalRotation.java [new file with mode: 0644] blob
src2/fr/orsay/lri/varna/controlers/ControleurInterpolator.java [new file with mode: 0644] blob
src2/fr/orsay/lri/varna/controlers/ControleurJCheckBoxMenuItem.java [new file with mode: 0644] blob
src2/fr/orsay/lri/varna/controlers/ControleurMenu.java [new file with mode: 0644] blob
src2/fr/orsay/lri/varna/controlers/ControleurMolette.java [new file with mode: 0644] blob
src2/fr/orsay/lri/varna/controlers/ControleurNumPeriod.java [new file with mode: 0644] blob
src2/fr/orsay/lri/varna/controlers/ControleurScriptParser.java [new file with mode: 0644] blob
src2/fr/orsay/lri/varna/controlers/ControleurSelectionHighlight.java [new file with mode: 0644] blob
src2/fr/orsay/lri/varna/controlers/ControleurSliderLabel.java [new file with mode: 0644] blob
src2/fr/orsay/lri/varna/controlers/ControleurSpaceBetweenBases.java [new file with mode: 0644] blob
src2/fr/orsay/lri/varna/controlers/ControleurTableAnnotations.java [new file with mode: 0644] blob
src2/fr/orsay/lri/varna/controlers/ControleurVARNAPanelKeys.java [new file with mode: 0644] blob
src2/fr/orsay/lri/varna/controlers/ControleurVueAnnotation.java [new file with mode: 0644] blob
src2/fr/orsay/lri/varna/controlers/ControleurZoom.java [new file with mode: 0644] blob
src2/fr/orsay/lri/varna/exceptions/ExceptionDrawingAlgorithm.java [new file with mode: 0644] blob
src2/fr/orsay/lri/varna/exceptions/ExceptionEdgeEndpointAlreadyConnected.java [new file with mode: 0644] blob
src2/fr/orsay/lri/varna/exceptions/ExceptionExportFailed.java [new file with mode: 0644] blob
src2/fr/orsay/lri/varna/exceptions/ExceptionFileFormatOrSyntax.java [new file with mode: 0644] blob
src2/fr/orsay/lri/varna/exceptions/ExceptionInvalidRNATemplate.java [new file with mode: 0644] blob
src2/fr/orsay/lri/varna/exceptions/ExceptionJPEGEncoding.java [new file with mode: 0644] blob
src2/fr/orsay/lri/varna/exceptions/ExceptionLoadingFailed.java [new file with mode: 0644] blob
src2/fr/orsay/lri/varna/exceptions/ExceptionModeleStyleBaseSyntaxError.java [new file with mode: 0644] blob
src2/fr/orsay/lri/varna/exceptions/ExceptionNAViewAlgorithm.java [new file with mode: 0644] blob
src2/fr/orsay/lri/varna/exceptions/ExceptionNonEqualLength.java [new file with mode: 0644] blob
src2/fr/orsay/lri/varna/exceptions/ExceptionParameterError.java [new file with mode: 0644] blob
src2/fr/orsay/lri/varna/exceptions/ExceptionPermissionDenied.java [new file with mode: 0644] blob
src2/fr/orsay/lri/varna/exceptions/ExceptionUnmatchedClosingParentheses.java [new file with mode: 0644] blob
src2/fr/orsay/lri/varna/exceptions/ExceptionWritingForbidden.java [new file with mode: 0644] blob
src2/fr/orsay/lri/varna/exceptions/ExceptionXMLGeneration.java [new file with mode: 0644] blob
src2/fr/orsay/lri/varna/exceptions/ExceptionXmlLoading.java [new file with mode: 0644] blob
src2/fr/orsay/lri/varna/exceptions/MappingException.java [new file with mode: 0644] blob
src2/fr/orsay/lri/varna/factories/RNAAlignment.java [new file with mode: 0644] blob
src2/fr/orsay/lri/varna/factories/RNAFactory.java [new file with mode: 0644] blob
src2/fr/orsay/lri/varna/factories/StockholmIO.java [new file with mode: 0644] blob
src2/fr/orsay/lri/varna/interfaces/InterfaceParameterLoader.java [new file with mode: 0644] blob
src2/fr/orsay/lri/varna/interfaces/InterfaceParseExport.java [new file with mode: 0644] blob
src2/fr/orsay/lri/varna/interfaces/InterfaceVARNABasesListener.java [new file with mode: 0644] blob
src2/fr/orsay/lri/varna/interfaces/InterfaceVARNAListener.java [new file with mode: 0644] blob
src2/fr/orsay/lri/varna/interfaces/InterfaceVARNAObservable.java [new file with mode: 0644] blob
src2/fr/orsay/lri/varna/interfaces/InterfaceVARNARNAListener.java [new file with mode: 0644] blob
src2/fr/orsay/lri/varna/interfaces/InterfaceVARNASelectionListener.java [new file with mode: 0644] blob
src2/fr/orsay/lri/varna/models/BaseList.java [new file with mode: 0644] blob
src2/fr/orsay/lri/varna/models/FullBackup.java [new file with mode: 0644] blob
src2/fr/orsay/lri/varna/models/VARNAConfig.java [new file with mode: 0644] blob
src2/fr/orsay/lri/varna/models/VARNAConfigLoader.java [new file with mode: 0644] blob
src2/fr/orsay/lri/varna/models/VARNAEdits.java [new file with mode: 0644] blob
src2/fr/orsay/lri/varna/models/annotations/ChemProbAnnotation.java [new file with mode: 0644] blob
src2/fr/orsay/lri/varna/models/annotations/HighlightRegionAnnotation.java [new file with mode: 0644] blob
src2/fr/orsay/lri/varna/models/annotations/TextAnnotation.java [new file with mode: 0644] blob
src2/fr/orsay/lri/varna/models/export/ArcCommand.java [new file with mode: 0644] blob
src2/fr/orsay/lri/varna/models/export/CircleCommand.java [new file with mode: 0644] blob
src2/fr/orsay/lri/varna/models/export/ColorCommand.java [new file with mode: 0644] blob
src2/fr/orsay/lri/varna/models/export/FillCircleCommand.java [new file with mode: 0644] blob
src2/fr/orsay/lri/varna/models/export/FillPolygonCommand.java [new file with mode: 0644] blob
src2/fr/orsay/lri/varna/models/export/FontCommand.java [new file with mode: 0644] blob
src2/fr/orsay/lri/varna/models/export/GraphicElement.java [new file with mode: 0644] blob
src2/fr/orsay/lri/varna/models/export/LineCommand.java [new file with mode: 0644] blob
src2/fr/orsay/lri/varna/models/export/PSExport.java [new file with mode: 0644] blob
src2/fr/orsay/lri/varna/models/export/PolygonCommand.java [new file with mode: 0644] blob
src2/fr/orsay/lri/varna/models/export/RectangleCommand.java [new file with mode: 0644] blob
src2/fr/orsay/lri/varna/models/export/SVGExport.java [new file with mode: 0644] blob
src2/fr/orsay/lri/varna/models/export/SecStrDrawingProducer.java [new file with mode: 0644] blob
src2/fr/orsay/lri/varna/models/export/SecStrProducerGraphics.java [new file with mode: 0644] blob
src2/fr/orsay/lri/varna/models/export/SwingGraphics.java [new file with mode: 0644] blob
src2/fr/orsay/lri/varna/models/export/TextCommand.java [new file with mode: 0644] blob
src2/fr/orsay/lri/varna/models/export/TikzExport.java [new file with mode: 0644] blob
src2/fr/orsay/lri/varna/models/export/VueVARNAGraphics.java [new file with mode: 0644] blob
src2/fr/orsay/lri/varna/models/export/XFIGExport.java [new file with mode: 0644] blob
src2/fr/orsay/lri/varna/models/geom/ComputeArcCenter.java [new file with mode: 0644] blob
src2/fr/orsay/lri/varna/models/geom/ComputeEllipseAxis.java [new file with mode: 0644] blob
src2/fr/orsay/lri/varna/models/geom/CubicBezierCurve.java [new file with mode: 0644] blob
src2/fr/orsay/lri/varna/models/geom/HalfEllipse.java [new file with mode: 0644] blob
src2/fr/orsay/lri/varna/models/geom/LinesIntersect.java [new file with mode: 0644] blob
src2/fr/orsay/lri/varna/models/geom/MiscGeom.java [new file with mode: 0644] blob
src2/fr/orsay/lri/varna/models/naView/Base.java [new file with mode: 0644] blob
src2/fr/orsay/lri/varna/models/naView/Connection.java [new file with mode: 0644] blob
src2/fr/orsay/lri/varna/models/naView/Loop.java [new file with mode: 0644] blob
src2/fr/orsay/lri/varna/models/naView/NAView.java [new file with mode: 0644] blob
src2/fr/orsay/lri/varna/models/naView/Radloop.java [new file with mode: 0644] blob
src2/fr/orsay/lri/varna/models/naView/Region.java [new file with mode: 0644] blob
src2/fr/orsay/lri/varna/models/rna/DrawRNATemplate.java [new file with mode: 0644] blob
src2/fr/orsay/lri/varna/models/rna/Mapping.java [new file with mode: 0644] blob
src2/fr/orsay/lri/varna/models/rna/ModelBaseStyle.java [new file with mode: 0644] blob
src2/fr/orsay/lri/varna/models/rna/ModeleBP.java [new file with mode: 0644] blob
src2/fr/orsay/lri/varna/models/rna/ModeleBPStyle.java [new file with mode: 0644] blob
src2/fr/orsay/lri/varna/models/rna/ModeleBackbone.java [new file with mode: 0644] blob
src2/fr/orsay/lri/varna/models/rna/ModeleBackboneElement.java [new file with mode: 0644] blob
src2/fr/orsay/lri/varna/models/rna/ModeleBase.java [new file with mode: 0644] blob
src2/fr/orsay/lri/varna/models/rna/ModeleBaseNucleotide.java [new file with mode: 0644] blob
src2/fr/orsay/lri/varna/models/rna/ModeleBasesComparison.java [new file with mode: 0644] blob
src2/fr/orsay/lri/varna/models/rna/ModeleColorMap.java [new file with mode: 0644] blob
src2/fr/orsay/lri/varna/models/rna/ModeleStrand.java [new file with mode: 0644] blob
src2/fr/orsay/lri/varna/models/rna/RNA.java [new file with mode: 0644] blob
src2/fr/orsay/lri/varna/models/rna/StructureTemp.java [new file with mode: 0644] blob
src2/fr/orsay/lri/varna/models/rna/VARNAPoint.java [new file with mode: 0644] blob
src2/fr/orsay/lri/varna/models/rna/VARNASecDraw.java [new file with mode: 0644] blob
src2/fr/orsay/lri/varna/models/templates/BatchBenchmark.java [new file with mode: 0644] blob
src2/fr/orsay/lri/varna/models/templates/BatchBenchmarkPrepare.java [new file with mode: 0644] blob
src2/fr/orsay/lri/varna/models/templates/Benchmark.java [new file with mode: 0644] blob
src2/fr/orsay/lri/varna/models/templates/DrawRNATemplateCurveMethod.java [new file with mode: 0644] blob
src2/fr/orsay/lri/varna/models/templates/DrawRNATemplateMethod.java [new file with mode: 0644] blob
src2/fr/orsay/lri/varna/models/templates/RNANodeValue2TemplateDistance.java [new file with mode: 0644] blob
src2/fr/orsay/lri/varna/models/templates/RNANodeValueTemplate.java [new file with mode: 0644] blob
src2/fr/orsay/lri/varna/models/templates/RNANodeValueTemplateBasePair.java [new file with mode: 0644] blob
src2/fr/orsay/lri/varna/models/templates/RNANodeValueTemplateBrokenBasePair.java [new file with mode: 0644] blob
src2/fr/orsay/lri/varna/models/templates/RNANodeValueTemplateSequence.java [new file with mode: 0644] blob
src2/fr/orsay/lri/varna/models/templates/RNATemplate.java [new file with mode: 0644] blob
src2/fr/orsay/lri/varna/models/templates/RNATemplateAlign.java [new file with mode: 0644] blob
src2/fr/orsay/lri/varna/models/templates/RNATemplateDrawingAlgorithmException.java [new file with mode: 0644] blob
src2/fr/orsay/lri/varna/models/templates/RNATemplateMapping.java [new file with mode: 0644] blob
src2/fr/orsay/lri/varna/models/templates/RNATemplateMappingException.java [new file with mode: 0644] blob
src2/fr/orsay/lri/varna/models/templates/TODO.txt [new file with mode: 0644] blob
src2/fr/orsay/lri/varna/models/treealign/AlignedNode.java [new file with mode: 0644] blob
src2/fr/orsay/lri/varna/models/treealign/ExampleDistance2.java [new file with mode: 0644] blob
src2/fr/orsay/lri/varna/models/treealign/ExampleDistance3.java [new file with mode: 0644] blob
src2/fr/orsay/lri/varna/models/treealign/GraphvizDrawableNodeValue.java [new file with mode: 0644] blob
src2/fr/orsay/lri/varna/models/treealign/RNANodeValue.java [new file with mode: 0644] blob
src2/fr/orsay/lri/varna/models/treealign/RNANodeValue2.java [new file with mode: 0644] blob
src2/fr/orsay/lri/varna/models/treealign/RNANodeValue2WrongTypeException.java [new file with mode: 0644] blob
src2/fr/orsay/lri/varna/models/treealign/RNATree.java [new file with mode: 0644] blob
src2/fr/orsay/lri/varna/models/treealign/RNATree2.java [new file with mode: 0644] blob
src2/fr/orsay/lri/varna/models/treealign/RNATree2Exception.java [new file with mode: 0644] blob
src2/fr/orsay/lri/varna/models/treealign/Tree.java [new file with mode: 0644] blob
src2/fr/orsay/lri/varna/models/treealign/TreeAlign.java [new file with mode: 0644] blob
src2/fr/orsay/lri/varna/models/treealign/TreeAlignException.java [new file with mode: 0644] blob
src2/fr/orsay/lri/varna/models/treealign/TreeAlignLabelDistanceAsymmetric.java [new file with mode: 0644] blob
src2/fr/orsay/lri/varna/models/treealign/TreeAlignLabelDistanceSymmetric.java [new file with mode: 0644] blob
src2/fr/orsay/lri/varna/models/treealign/TreeAlignResult.java [new file with mode: 0644] blob
src2/fr/orsay/lri/varna/models/treealign/TreeGraphviz.java [new file with mode: 0644] blob
src2/fr/orsay/lri/varna/utils/RNAMLParser.java [new file with mode: 0644] blob
src2/fr/orsay/lri/varna/utils/TranslateFormatRNaseP.java [new file with mode: 0644] blob
src2/fr/orsay/lri/varna/utils/VARNASessionParser.java [new file with mode: 0644] blob
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src2/fr/orsay/lri/varna/views/VueBPHeightIncrement.java [new file with mode: 0644] blob
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src2/fr/orsay/lri/varna/views/VueBases.java [new file with mode: 0644] blob
src2/fr/orsay/lri/varna/views/VueBorder.java [new file with mode: 0644] blob
src2/fr/orsay/lri/varna/views/VueChemProbAnnotation.java [new file with mode: 0644] blob
src2/fr/orsay/lri/varna/views/VueColorMapStyle.java [new file with mode: 0644] blob
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src2/fr/orsay/lri/varna/views/VueGlobalRotation.java [new file with mode: 0644] blob
src2/fr/orsay/lri/varna/views/VueHighlightRegionEdit.java [new file with mode: 0644] blob
src2/fr/orsay/lri/varna/views/VueJPEG.java [new file with mode: 0644] blob
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