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JAL-1780 JAL-653 Format/AppletFormat import and export pipeline regularised, uses...
[jalview.git]
/
test
/
jalview
/
util
/
MappingUtilsTest.java
diff --git
a/test/jalview/util/MappingUtilsTest.java
b/test/jalview/util/MappingUtilsTest.java
index
2d197be
..
8fc4507
100644
(file)
--- a/
test/jalview/util/MappingUtilsTest.java
+++ b/
test/jalview/util/MappingUtilsTest.java
@@
-5,7
+5,6
@@
import static org.junit.Assert.assertSame;
import static org.junit.Assert.assertTrue;
import jalview.api.AlignViewportI;
import jalview.datamodel.AlignedCodonFrame;
import static org.junit.Assert.assertTrue;
import jalview.api.AlignViewportI;
import jalview.datamodel.AlignedCodonFrame;
-import jalview.datamodel.Alignment;
import jalview.datamodel.AlignmentI;
import jalview.datamodel.ColumnSelection;
import jalview.datamodel.SearchResults;
import jalview.datamodel.AlignmentI;
import jalview.datamodel.ColumnSelection;
import jalview.datamodel.SearchResults;
@@
-16,6
+15,7
@@
import jalview.datamodel.SequenceI;
import jalview.gui.AlignViewport;
import jalview.io.AppletFormatAdapter;
import jalview.io.FormatAdapter;
import jalview.gui.AlignViewport;
import jalview.io.AppletFormatAdapter;
import jalview.io.FormatAdapter;
+
import java.awt.Color;
import java.io.IOException;
import java.util.Arrays;
import java.awt.Color;
import java.io.IOException;
import java.util.Arrays;
@@
-26,7
+26,6
@@
import java.util.Set;
import org.junit.Test;
import org.junit.Test;
-
public class MappingUtilsTest
{
private AlignViewportI dnaView;
public class MappingUtilsTest
{
private AlignViewportI dnaView;
@@
-247,7
+246,7
@@
public class MappingUtilsTest
protected AlignmentI loadAlignment(final String data, String format)
throws IOException
{
protected AlignmentI loadAlignment(final String data, String format)
throws IOException
{
- Alignment a = new FormatAdapter().readFile(data,
+ AlignmentI a = new FormatAdapter().readFile(data,
AppletFormatAdapter.PASTE, format);
a.setDataset(null);
return a;
AppletFormatAdapter.PASTE, format);
a.setDataset(null);
return a;