See
<a href="commandline.html">running Jalview from the command line</a>
for more information.
+ <br />
+ <br />Jalview processes arguments on the command line sequentially. If
+ you would like to pass a <a href="jvlfiles.html">'JVL' file</a> containing
+ <a href="../memory.html">memory settings</a> or any other launch
+ parameters, then include it at the beginning of the command line to
+ ensure they are processed before any remaining arguments.
<br>
<table width="100%" border="1" cellspacing="0" cellpadding="0">
<tr>
<td><div align="left">Use the given Jalview properties
file instead of users default.</div></td>
</tr>
+
+ <tr>
+ <td><div align="center">-out FILE</div></td>
+ <td><div align="left">
+ Redirect all output and error messaging to FILE.
+ <br/>
+ If FILE is a relative path, this will be relative to the Jalview app directory.
+ </div></td>
+ </tr>
+
<tr>
<td><div align="center">-features FILE/URL</div></td>
<td><div align="left">
</tr>
<tr>
<td>
- <div align="center">-vdoc VAMSAS DOCUMENT FILE/URL</div>
- <td>
- <div align="left">
- Import the given vamsas document into a new session.<br>
- <em>New in 2.5</em>
- </div>
- </td>
- </tr>
- <tr>
- <td>
- <div align="center">-vsess VAMSAS SESSION URL</div>
- <td>
- <div align="left">
- Join the given vamsas session<br>If a document was also
- specified, this will be imported first and then committed as
- new data from Jalview to the specified session (Experimental -
- not yet enabled!).<em>New in 2.5</em>
- </div>
- </div>
- </td>
- </tr>
- <tr>
- <td>
<div align="center">-fasta FILE</div>
</td>