<td><div align="left">Use the given Jalview properties
file instead of users default.</div></td>
</tr>
+
+ <tr>
+ <td><div align="center">-out FILE</div></td>
+ <td><div align="left">
+ Redirect all output and error messaging to FILE.
+ <br/>
+ If FILE is a relative path, this will be relative to the Jalview app directory.
+ </div></td>
+ </tr>
+
<tr>
<td><div align="center">-features FILE/URL</div></td>
<td><div align="left">
"Usage: jalview -open [FILE] [OUTPUT_FORMAT] [OUTPUT_FILE]\n\n"
+ "-nodisplay\tRun Jalview without User Interface.\n"
+ "-props FILE\tUse the given Jalview properties file instead of users default.\n"
+ + "-out FILE\tRedirect output and error messages to FILE.\n"
+ "-colour COLOURSCHEME\tThe colourscheme to be applied to the alignment\n"
+ "-annotations FILE\tAdd precalculated annotations to the alignment.\n"
+ "-tree FILE\tLoad the given newick format tree file onto the alignment\n"