<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.5)
- * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
*
* Jalview is free software: you can redistribute it and/or
* modify it under the terms of the GNU General Public License
* as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
- *
+ *
* Jalview is distributed in the hope that it will be useful, but
* WITHOUT ANY WARRANTY; without even the implied warranty
* of MERCHANTABILITY or FITNESS FOR A PARTICULAR
* PURPOSE. See the GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public License along with Jalview. If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
-->
+<head><title>User Defined Colours</title></head>
+<body>
+<p><em>User Defined Colours</em></p>
+<p><img src="userDefined.gif" width="719" height="368"> </p>
+<p>You may define any number of new colour schemes, each with a unique name. <br>
+ <br>
+ Each of the residues in a new colour scheme may be assigned a new user defined
+ colour. <br>
+ <br>
+ Click "Apply" or "OK" to set your new colours on the active
+ alignment window. </p>
+<p>Click "Cancel" to undo your changes if you pressed the "Apply"
+ button. <br>
+ <br>
+ If you save your colour scheme with a unique name the colour scheme name will
+ be added to the "Colour" menu on each new alignment window.<br>
+ <br>
+ Any saved colour schemes will be automatically loaded the next time you use
+ Jalview.</p>
+</body>
+</html>