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- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.5)
- * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
*
* This file is part of Jalview.
*
* Jalview is free software: you can redistribute it and/or
* modify it under the terms of the GNU General Public License
- * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
- *
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
+ *
* Jalview is distributed in the hope that it will be useful, but
* WITHOUT ANY WARRANTY; without even the implied warranty
* of MERCHANTABILITY or FITNESS FOR A PARTICULAR
* PURPOSE. See the GNU General Public License for more details.
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- * You should have received a copy of the GNU General Public License along with Jalview. If not, see <http://www.gnu.org/licenses/>.
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+ * You should have received a copy of the GNU General Public License
+ * along with Jalview. If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
+ -->
<head>
<title>What's new ?</title>
</head>
<body>
-<p><strong>What's new ?</strong></p>
-<p>Jalview 2.6 introduces new web services, and includes an updated
-version of the Jmol molecular graphics visualization system. See the <a
- href="releases.html#Jalview2.6">release history</a> for the full
-details.</p>
-<p><strong>Highlights in Jalview Version 2.6</strong></p>
-<ul>
- <li><a href="webServices/JABAWS.html">JABA Web Services</a> for
- multiple alignment using:
- <ul>
- <li>ClustalW</li>
- <li>MAFFT</li>
- <li>Muscle</li>
- <li>ProbCons</li>
- <li>T-COFFEE</li>
- </ul>
- </li>
- <li>User modifiable alignment service parameters</li>
- <li>Visualization of superposed structures associated with protein
- or nucleotide sequence alignments.</li>
- <li>Export coordinates and projection as CSV from PCA viewer</li>
-</ul>
+ <p>
+ <strong>What's new in Jalview 2.10.3 ?</strong>
+ </p>
+ <p>
+ Version 2.10.3 was released in November 2017. The full list of
+ bug fixes and new features can be found in the <a
+ href="releases.html#Jalview.2.10.3"> 2.10.3 Release Notes</a>, but
+ the highlights are below.
+ </p>
+ <ul>
+ <li>Faster import and more responsive UI when working with wide alignments and handling hundreds and thousands of sequence features</li>
+ <li>
+ <li>Improved usability with <a href="features/pdbsequencefetcher.html">PDB</a> and
+ <a href="features/uniprotsequencefetcher.html">UniProt</a> Free Text Search
+ dialog, and new tab for retrieval of sequences for lists of IDs.</li>
+ </ul>
+ <p>
+ <strong><a name="experimental">Experimental Features</a></strong>
+ </p>
+ <p>
+ This release of Jalview introduces an <em>Experimental Features</em>
+ option in the Jalview Desktop's <em>Tools</em> menu that allows you
+ to try out features that are still in development. To access the
+ experimental features below - first enable the <strong>Tools→Enable
+ Experimental Features</strong> option, and then restart Jalview.
+ </p>
+ <ul>
+ <li><em>Annotation transfer between Chimera and Jalview</em><br />Two
+ <a href="features/chimera.html#experimental">new entries in
+ the Chimera viewer's Chimera menu</a> allow positional annotation to
+ be exchanged between Chimera and Jalview.</li>
+ </ul>
-<p><strong>Issues Resolved (a select list - see release history for details)</strong></p>
-<ul>
- <li>clustalx colourscheme colours Ds preferentially when both D+E
- are present in over 50% of the column</li>
- <li>Prevent sequence fetcher from replacing ',' for ';' when querying DAS sequence sources</li>
- <li>InstallAnywhere builds fail to launch on OS X java 10.5 update
- 4 (due to apple Java 1.6 update)</li>
-</ul>
-<p>See the <a href="releases.html">Release History</a> page for
-details of all new features and resolved issues.</p>
</body>
</html>