JAL-2835 spike updated with latest
authorgmungoc <g.m.carstairs@dundee.ac.uk>
Wed, 15 Nov 2017 10:51:51 +0000 (10:51 +0000)
committergmungoc <g.m.carstairs@dundee.ac.uk>
Wed, 15 Nov 2017 10:51:51 +0000 (10:51 +0000)
commitf8b17a9e7363b8a9e7cd12d61bc6d611c7c97d7d
tree765df1032acfbd7f92c869ac322283219f389025
parent05d220bbea0e8ce667490219436b96ebdf9826df
JAL-2835 spike updated with latest
55 files changed:
.classpath
benchmarking/README
benchmarking/src/main/java/org/jalview/HiddenColumnsBenchmark.java
build.xml
help/helpTOC.xml
help/html/features/pdbseqfetcher.png
help/html/features/pdbsequencefetcher.html
help/html/features/uniprotseqfetcher.png
help/html/features/uniprotsequencefetcher.html
help/html/releases.html
help/html/whatsNew.html
lib/groovy-all-2.4.12-indy.jar [new file with mode: 0644]
resources/lang/Messages.properties
resources/lang/Messages_es.properties
src/jalview/api/FeatureColourI.java
src/jalview/api/FeatureRenderer.java
src/jalview/appletgui/FeatureColourChooser.java
src/jalview/datamodel/Sequence.java
src/jalview/datamodel/SequenceFeature.java
src/jalview/datamodel/SequenceI.java
src/jalview/datamodel/features/FeatureAttributes.java
src/jalview/ext/ensembl/EnsemblGenomes.java
src/jalview/fts/api/GFTSPanelI.java
src/jalview/fts/core/GFTSPanel.java
src/jalview/fts/service/pdb/PDBFTSPanel.java
src/jalview/fts/service/uniprot/UniprotFTSPanel.java
src/jalview/gui/AlignViewport.java
src/jalview/gui/FeatureColourChooser.java
src/jalview/gui/FeatureSettings.java
src/jalview/gui/OverviewCanvas.java
src/jalview/gui/OverviewPanel.java
src/jalview/gui/SequenceFetcher.java
src/jalview/gui/StructureChooser.java
src/jalview/gui/StructureViewer.java
src/jalview/io/AlignFile.java
src/jalview/io/SequenceAnnotationReport.java
src/jalview/io/cache/JvCacheableInputBox.java
src/jalview/io/vcf/VCFLoader.java
src/jalview/schemes/FeatureColour.java
src/jalview/util/matcher/KeyedMatcher.java
src/jalview/util/matcher/KeyedMatcherI.java
src/jalview/util/matcher/KeyedMatcherSet.java
src/jalview/util/matcher/KeyedMatcherSetI.java
src/jalview/util/matcher/Matcher.java
src/jalview/viewmodel/seqfeatures/FeatureRendererModel.java
test/jalview/datamodel/features/FeatureAttributesTest.java [new file with mode: 0644]
test/jalview/gui/AlignViewportTest.java
test/jalview/gui/StructureViewerTest.java
test/jalview/schemes/Blosum62ColourSchemeTest.java
test/jalview/util/MapListTest.java
test/jalview/util/MathUtilsTest.java
test/jalview/util/matcher/ConditionTest.java
test/jalview/util/matcher/KeyedMatcherSetTest.java
test/jalview/util/matcher/KeyedMatcherTest.java
test/jalview/util/matcher/MatcherTest.java