tidied up system.out messages and moved many to stderr.

[jalview.git] / src / MCview / PDBChain.java

diff --git a/src/MCview/PDBChain.java b/src/MCview/PDBChain.java
index 92627d5..2e0ce30 100755 (executable)
--- a/src/MCview/PDBChain.java
+++ b/src/MCview/PDBChain.java
@@ -122,7 +122,7 @@ public class PDBChain {
 \r
       // Keep totting up the sequence\r
       if (ResidueProperties.getAA3Hash().get(tmpat.resName) == null) {\r
-        System.out.println("Null aa3Hash for " + tmpat.resName);\r
+        System.err.println("PDBReader:Null aa3Hash for " + tmpat.resName);\r
       } else {\r
         String tmpres2 =\r
           ResidueProperties.aa[((Integer)ResidueProperties.getAA3Hash().get(tmpat.resName)).intValue()];\r
@@ -131,7 +131,7 @@ public class PDBChain {
       //      System.out.println(tmpat.resName + " " + tmpres2);\r
     }\r
     sequence = new Sequence("PDB_seq",seq,1,seq.length());\r
-    System.out.println("Sequence = " + seq);\r
+    System.out.println("PDB Sequence is :\nSequence = " + seq);\r
     System.out.println("No of residues = " +residues.size());\r
   }\r
 \r