JAL-2349 allow PAE or other contact matrices to hold a coordinate mapping allowing...

[jalview.git] / src / jalview / api / AlignViewportI.java

diff --git a/src/jalview/api/AlignViewportI.java b/src/jalview/api/AlignViewportI.java
index 03efec5..e3478ea 100644 (file)
--- a/src/jalview/api/AlignViewportI.java
+++ b/src/jalview/api/AlignViewportI.java
@@ -477,6 +477,11 @@ public interface AlignViewportI extends ViewStyleI
    */
   SearchResultsI getSearchResults();
 
+  /**
+   * Retrieve a ContactListI corresponding to column in an annotation row in an alignment.
+   * @param _aa - annotation with associated matrix data
+   * @param column - column in alignment where _aa is associated
+   */
   ContactListI getContactList(AlignmentAnnotation _aa, int column);
 
   /**