JAL-2349 allow PAE or other contact matrices to hold a coordinate mapping allowing...
authorJames Procter <j.procter@dundee.ac.uk>
Fri, 12 May 2023 15:28:31 +0000 (16:28 +0100)
committerJames Procter <j.procter@dundee.ac.uk>
Fri, 12 May 2023 15:28:31 +0000 (16:28 +0100)
commit9e40070f757fc662aba39ba6314be4937276ead4
tree163bb3de182600ff4d0577be3c6755dca0d086a6
parent54d087d5f1e550d0d17882b1e594683146ca7e6a
JAL-2349 allow PAE or other contact matrices to hold a coordinate mapping allowing them to be transferred from one sequence to another - basic working but region selects are broken
16 files changed:
src/jalview/analysis/AverageDistanceEngine.java
src/jalview/api/AlignViewportI.java
src/jalview/datamodel/Alignment.java
src/jalview/datamodel/ContactListI.java
src/jalview/datamodel/ContactListImpl.java
src/jalview/datamodel/ContactListProviderI.java
src/jalview/datamodel/ContactMapHolder.java
src/jalview/datamodel/ContactMatrix.java
src/jalview/datamodel/ContactMatrixI.java
src/jalview/datamodel/SeqDistanceContactMatrix.java
src/jalview/renderer/ContactGeometry.java
src/jalview/renderer/ContactMapRenderer.java
src/jalview/ws/datamodel/MappableContactMatrixI.java [new file with mode: 0644]
src/jalview/ws/datamodel/alphafold/PAEContactMatrix.java
src/mc_view/PDBChain.java
test/jalview/datamodel/PAEContactMatrixTest.java [new file with mode: 0644]