JAL-2349 allow PAE or other contact matrices to hold a coordinate mapping allowing...

[jalview.git] / src / jalview / datamodel / ContactMatrixI.java

diff --git a/src/jalview/datamodel/ContactMatrixI.java b/src/jalview/datamodel/ContactMatrixI.java
index 1c169ef..ba2ee48 100644 (file)
--- a/src/jalview/datamodel/ContactMatrixI.java
+++ b/src/jalview/datamodel/ContactMatrixI.java
@@ -14,10 +14,6 @@ public interface ContactMatrixI
 
   float getMax();
 
-  boolean hasReferenceSeq();
-
-  SequenceI getReferenceSeq();
-
   String getAnnotDescr();
 
   String getAnnotLabel();
@@ -72,5 +68,6 @@ public interface ContactMatrixI
 
   void setColorForGroup(BitSet bs, Color color);
 
-  default Color getColourForGroup(BitSet bs) { return Color.white;};
+  default Color getColourForGroup(BitSet bs) { return Color.white;}
+
 }