return true;
}
- public String getFeaturesFrom(AlignFrameI alf, String format)
+ public String getFeaturesFrom(AlignFrameI alf, String format,
+ boolean includeNonpositionsFeatures, boolean includeComplement)
{
AlignFrame f = ((AlignFrame) alf);
{
features = formatter.printJalviewFormat(
f.getViewport().getAlignment().getSequencesArray(),
- f.alignPanel.getFeatureRenderer(), true);
+ f.alignPanel.getFeatureRenderer(),
+ includeNonpositionsFeatures, includeComplement);
}
else
{
features = formatter.printGffFormat(
f.getViewport().getAlignment().getSequencesArray(),
- f.alignPanel.getFeatureRenderer(), true);
+ f.alignPanel.getFeatureRenderer(),
+ includeNonpositionsFeatures, includeComplement);
}
if (features == null)