v2

[jalview.git] / src / jalview / datamodel / Annotation.java

diff --git a/src/jalview/datamodel/Annotation.java b/src/jalview/datamodel/Annotation.java
index 55833e5..b371bc3 100755 (executable)
--- a/src/jalview/datamodel/Annotation.java
+++ b/src/jalview/datamodel/Annotation.java
@@ -1,6 +1,6 @@
 /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.5)
- * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.7)
+ * Copyright (C) 2011 J Procter, AM Waterhouse, J Engelhardt, LM Lui, G Barton, M Clamp, S Searle
  * 
  * This file is part of Jalview.
  * 
@@ -18,6 +18,9 @@
 package jalview.datamodel;
 
 import java.awt.*;
+import java.util.ArrayList;
+
+import fr.orsay.lri.varna.models.rna.RNA;
 
 /**
  * DOCUMENT ME!
@@ -34,10 +37,12 @@ public class Annotation
   public String description = ""; // currently used as mouse over
 
   /** DOCUMENT ME!! */
-  public char secondaryStructure = ' '; // recognises H and E
+  public char secondaryStructure = ' '; // recognises H, E and S(?)
 
   /** DOCUMENT ME!! */
   public float value;
+  
+
 
   // add visual cues here
 
@@ -62,6 +67,7 @@ public class Annotation
     description = desc;
     secondaryStructure = ss;
     value = val;
+    
   }
 
   /**
@@ -105,6 +111,7 @@ public class Annotation
     secondaryStructure = that.secondaryStructure;
     value = that.value;
     colour = that.colour;
+
   }
 
   /**
@@ -115,6 +122,10 @@ public class Annotation
    */
   public Annotation(float val)
   {
-    this(null, null, ' ', val);
+    this(null, null, ' ', val,null);
   }
+  
+  
+  
+  
 }