public static String PDB = "PDB";
/**
+ * mmCIF Entry Code
+ */
+ public static String MMCIF = "mmCIF";
+
+ /**
* EMBL ID
*/
public static String EMBL = "EMBL";
public static final String GENEDB = "GeneDB".toUpperCase();
/**
- * List of databases whose sequences might have coding regions annotated
+ * Ensembl
*/
- public static final String[] DNACODINGDBS = { EMBL, EMBLCDS, GENEDB };
-
- public static final String[] CODINGDBS = { EMBLCDS, GENEDB };
+ public static final String ENSEMBL = "ENSEMBL";
- public static final String[] PROTEINDBS = { UNIPROT, PDB, UNIPROTKB,
- EMBLCDSProduct };
+ public static final String ENSEMBLGENOMES = "ENSEMBLGENOMES";
- public static final String[] PROTEINSEQ = { UNIPROT, UNIPROTKB,
- EMBLCDSProduct };
+ /**
+ * List of databases whose sequences might have coding regions annotated
+ */
+ public static final String[] DNACODINGDBS = { EMBL, EMBLCDS, GENEDB,
+ ENSEMBL };
- public static final String[] PROTEINSTR = { PDB };
+ public static final String[] CODINGDBS = { EMBLCDS, GENEDB, ENSEMBL };
- public static final String[] DOMAINDBS = { PFAM, RFAM };
+ public static final String[] PROTEINDBS = { UNIPROT, PDB, UNIPROTKB,
+ EMBLCDSProduct, ENSEMBL }; // Ensembl ENSP* entries are protein
}