JAL-3417 access to consensus,conservation,cdsprofile and rnastrucconsensus calculatio...

[jalview.git] / src / jalview / datamodel / SequenceGroup.java

diff --git a/src/jalview/datamodel/SequenceGroup.java b/src/jalview/datamodel/SequenceGroup.java
index 3bf7bc4..1b8181b 100755 (executable)
--- a/src/jalview/datamodel/SequenceGroup.java
+++ b/src/jalview/datamodel/SequenceGroup.java
@@ -31,6 +31,7 @@ import java.beans.PropertyChangeListener;
 import java.beans.PropertyChangeSupport;
 import java.util.ArrayList;
 import java.util.Arrays;
+import java.util.Hashtable;
 import java.util.List;
 import java.util.Map;
 
@@ -503,6 +504,7 @@ public class SequenceGroup implements AnnotatedCollectionI
    * 
    * @return DOCUMENT ME!
    */
+  @Override
   public Conservation getConservation()
   {
     return conserve;
@@ -675,6 +677,26 @@ public class SequenceGroup implements AnnotatedCollectionI
 
   public ProfilesI consensusData = null;
 
+  @Override
+  public ProfilesI getSequenceConsensusHash()
+  {
+    return consensusData;
+  }
+
+  @Override
+  public Hashtable[] getComplementConsensusHash()
+  {
+    // TODO: Groupwise CDS Consensus
+    return null;
+  }
+
+  @Override
+  public Hashtable[] getRnaStructureConsensusHash()
+  {
+    // TODO Groupwise RNA Consensus
+    return null;
+  }
+
   private void _updateConsensusRow(ProfilesI cnsns, long nseq)
   {
     if (consensus == null)