import jalview.io.FileParse;
import jalview.io.StructureFile;
import jalview.schemes.ResidueProperties;
-import jalview.structure.StructureViewSettings;
+import jalview.structure.StructureImportSettings;
import jalview.util.MessageManager;
import java.io.IOException;
prot.add(chainseq);
}
- if (StructureViewSettings.isPredictSecondaryStructure())
+ if (StructureImportSettings.isPredictSecondaryStructure())
{
createAnnotation(chainseq, chain, ms.at);
}
{
// System.out.println("Seq Id : " + atom.getSeqID());
// System.out.println("To String : " + atom.toString());
- if (atom.isHetero())
+ if (!StructureImportSettings.isProcessHETATMs() && atom.isHetero())
{
continue;
}