/*
- * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
- * Copyright (C) $$Year-Rel$$ The Jalview Authors
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
*
SecondaryStructureListener, InterfaceVARNASelectionListener,
VamsasSource
{
- private static final byte[] PAIRS = new byte[]
- { '(', ')', '[', ']', '{', '}', '<', '>' };
+ private static final byte[] PAIRS = new byte[] { '(', ')', '[', ']', '{',
+ '}', '<', '>' };
private AppVarnaBinding vab;
String theTitle = sname
+ (aa.sequenceRef == null ? " trimmed to " + seq.getName() : "");
theTitle = MessageManager.formatMessage("label.varna_params",
- new String[]
- { theTitle });
+ new String[] { theTitle });
setTitle(theTitle);
String gappedTitle = sname + " (with gaps)";
vab.setSelectedIndex(0);
}
-
/**
* Constructor that links the viewer to a parent panel (but has no structures
* yet - use addModel to add them)
vab.setSelectedIndex(selectedIndex);
}
-
/**
* Add a model with associated Varna session file
*
}
}
-
/**
* Replace everything except RNA secondary structure characters with a period
*