public class AssociatePdbFileWithSeq
{
-/**
- * assocate the given PDB file with
- * @param choice
- * @param sequence
- * @throws SAXException
- * @throws ParserConfigurationException
- * @throws ExceptionFileFormatOrSyntax
- * @throws ExceptionLoadingFailed
- * @throws ExceptionPermissionDenied
- * @throws InterruptedException
- * @throws ExceptionUnmatchedClosingParentheses
- */
- public PDBEntry associatePdbWithSeq(String choice, String protocol, SequenceI sequence, boolean prompt) throws ExceptionFileFormatOrSyntax, ParserConfigurationException, SAXException, ExceptionPermissionDenied, ExceptionLoadingFailed, InterruptedException, ExceptionUnmatchedClosingParentheses
+ /**
+ * assocate the given PDB file with
+ *
+ * @param choice
+ * @param sequence
+ */
+ public PDBEntry associatePdbWithSeq(String choice, String protocol,
+ SequenceI sequence, boolean prompt)
{
PDBEntry entry = new PDBEntry();
try
{
-
- System.out.println("This is a annotation PDB");
-
-
- MCview.PDBfile pdbfile = new MCview.PDBfile(choice,
- protocol);
+ MCview.PDBfile pdbfile = new MCview.PDBfile(choice, protocol);
if (pdbfile.id == null)
{
{
entry.setId(pdbfile.id);
}
-
+
} catch (java.io.IOException ex)
{
ex.printStackTrace();
entry.setFile(choice);
sequence.getDatasetSequence().addPDBId(entry);
return entry;
-
}
-
}