*/
package jalview.gui;
-import jalview.datamodel.SequenceI;
-import jalview.viewmodel.ViewportListenerI;
-import jalview.viewmodel.ViewportRanges;
-
import java.awt.BorderLayout;
import java.awt.Color;
import java.awt.Font;
import javax.swing.JPanel;
+import jalview.datamodel.SequenceI;
+import jalview.viewmodel.ViewportListenerI;
+import jalview.viewmodel.ViewportRanges;
+
/**
* DOCUMENT ME!
*
g.drawString(s.getDisplayId(av.getShowJVSuffix()), xPos,
(((i - starty + 1) * charHeight) + ypos) - (charHeight / 5));
- if (hiddenRows)
+ if (hiddenRows && av.getShowHiddenMarkers())
{
drawMarker(g, av, i, starty, ypos);
}
}
/**
- * Draws sequence ids from sequence index starty to endy (inclusive), with the
- * font and other display settings configured on the viewport. Ids of
+ * Draws sequence ids from sequence index startSeq to endSeq (inclusive), with
+ * the font and other display settings configured on the viewport. Ids of
* sequences included in the selection are coloured grey, otherwise the
* current id colour for the sequence id is used.
*
* @param g
* @param alignViewport
- * @param starty
- * @param endy
+ * @param startSeq
+ * @param endSeq
* @param selection
*/
- void drawIds(Graphics2D g, AlignViewport alignViewport, final int starty,
- final int endy, List<SequenceI> selection)
+ void drawIds(Graphics2D g, AlignViewport alignViewport, final int startSeq,
+ final int endSeq, List<SequenceI> selection)
{
Font font = alignViewport.getFont();
if (alignViewport.isSeqNameItalics())
Color currentColor = Color.white;
Color currentTextColor = Color.black;
- boolean hasHiddenRows = av.hasHiddenRows();
+ boolean hasHiddenRows = alignViewport.hasHiddenRows();
if (alignViewport.getWrapAlignment())
{
- drawIdsWrapped(starty, hasHiddenRows);
+ drawIdsWrapped(g, alignViewport, startSeq, getHeight());
return;
}
int xPos = 0;
// Now draw the id strings
- for (int i = starty; i <= endy; i++)
+ for (int i = startSeq; i <= endSeq; i++)
{
SequenceI sequence = alignViewport.getAlignment().getSequenceAt(i);
if (hasHiddenRows || alignViewport.isDisplayReferenceSeq())
{
g.setFont(getHiddenFont(sequence, alignViewport));
+ fm = g.getFontMetrics();
}
// Selected sequence colours
currentColor = Color.black;
currentTextColor = Color.white;
}
- else if ((av.getSelectionGroup() != null) && av.getSelectionGroup()
- .getSequences(null).contains(sequence))
+ else if ((alignViewport.getSelectionGroup() != null) && alignViewport
+ .getSelectionGroup().getSequences(null).contains(sequence))
{
currentColor = Color.lightGray;
currentTextColor = Color.black;
g.setColor(currentColor);
int charHeight = alignViewport.getCharHeight();
- g.fillRect(0, (i - starty) * charHeight,
+ g.fillRect(0, (i - startSeq) * charHeight,
getWidth(), charHeight);
g.setColor(currentTextColor);
xPos = panelWidth - fm.stringWidth(string) - 4;
}
- g.drawString(string, xPos, (((i - starty) * charHeight) + charHeight)
+ g.drawString(string, xPos, (((i - startSeq) * charHeight) + charHeight)
- (charHeight / 5));
- if (hasHiddenRows)
+ if (hasHiddenRows && av.getShowHiddenMarkers())
{
- drawMarker(g, alignViewport, i, starty, 0);
+ drawMarker(g, alignViewport, i, startSeq, 0);
}
}
}
/**
- * Draws sequence ids in wrapped mode
+ * Draws sequence ids, and annotation labels if annotations are shown, in
+ * wrapped mode
*
- * @param starty
- * @param hasHiddenRows
+ * @param g
+ * @param alignViewport
+ * @param startSeq
*/
- protected void drawIdsWrapped(int starty, boolean hasHiddenRows)
+ void drawIdsWrapped(Graphics2D g, AlignViewport alignViewport,
+ int startSeq, int pageHeight)
{
- int maxwidth = av.getAlignment().getWidth();
- int alheight = av.getAlignment().getHeight();
+ int alignmentWidth = alignViewport.getAlignment().getWidth();
+ final int alheight = alignViewport.getAlignment().getHeight();
- if (av.hasHiddenColumns())
- {
- maxwidth = av.getAlignment().getHiddenColumns()
- .absoluteToVisibleColumn(maxwidth) - 1;
- }
+ /*
+ * assumption: SeqCanvas.calculateWrappedGeometry has been called
+ */
+ SeqCanvas seqCanvas = alignViewport.getAlignPanel()
+ .getSeqPanel().seqCanvas;
- int annotationHeight = 0;
+ final int charHeight = alignViewport.getCharHeight();
AnnotationLabels labels = null;
- if (av.isShowAnnotation())
- {
- if (ap == null)
- {
- ap = new AnnotationPanel(av);
- }
-
- annotationHeight = ap.adjustPanelHeight();
- labels = new AnnotationLabels(av);
- }
-
- int hgap = av.getCharHeight();
- if (av.getScaleAboveWrapped())
+ if (alignViewport.isShowAnnotation())
{
- hgap += av.getCharHeight();
+ labels = new AnnotationLabels(alignViewport);
}
- int cHeight = alheight * av.getCharHeight() + hgap + annotationHeight;
-
- ViewportRanges ranges = av.getRanges();
+ ViewportRanges ranges = alignViewport.getRanges();
int rowSize = ranges.getViewportWidth();
* draw repeating sequence ids until out of sequence data or
* out of visible space, whichever comes first
*/
- int ypos = hgap;
- int row = ranges.getStartRes();
- while ((ypos <= getHeight()) && (row < maxwidth))
+ boolean hasHiddenRows = alignViewport.hasHiddenRows();
+ int ypos = seqCanvas.wrappedSpaceAboveAlignment;
+ int rowStartRes = ranges.getStartRes();
+ while ((ypos <= pageHeight) && (rowStartRes < alignmentWidth))
{
- for (int i = starty; i < alheight; i++)
+ for (int i = startSeq; i < alheight; i++)
{
- SequenceI s = av.getAlignment().getSequenceAt(i);
- if (hasHiddenRows || av.isDisplayReferenceSeq())
+ SequenceI s = alignViewport.getAlignment().getSequenceAt(i);
+ if (hasHiddenRows || alignViewport.isDisplayReferenceSeq())
{
- gg.setFont(getHiddenFont(s, av));
+ g.setFont(getHiddenFont(s, alignViewport));
}
else
{
- gg.setFont(getIdfont());
+ g.setFont(getIdfont());
}
-
- drawIdString(gg, hasHiddenRows, s, i, 0, ypos);
+ drawIdString(g, hasHiddenRows, s, i, 0, ypos);
}
- if (labels != null && av.isShowAnnotation())
+ if (labels != null && alignViewport.isShowAnnotation())
{
- gg.translate(0, ypos + (alheight * av.getCharHeight()));
- labels.drawComponent(gg, getWidth());
- gg.translate(0, -ypos - (alheight * av.getCharHeight()));
+ g.translate(0, ypos + (alheight * charHeight));
+ labels.drawComponent(g, getWidth());
+ g.translate(0, -ypos - (alheight * charHeight));
}
- ypos += cHeight;
- row += rowSize;
+ ypos += seqCanvas.wrappedRepeatHeightPx;
+ rowStartRes += rowSize;
}
}
git://source.jalview.org / jalview.git / blobdiff