JAL-2428 separate TreeModel from TreeBuilder/NJTree/AverageDistanceTree

[jalview.git] / src / jalview / gui / TreeChooser.java

diff --git a/src/jalview/gui/TreeChooser.java b/src/jalview/gui/TreeChooser.java
index 9cbb47a..41b7d48 100644 (file)
--- a/src/jalview/gui/TreeChooser.java
+++ b/src/jalview/gui/TreeChooser.java
@@ -260,6 +260,17 @@ public class TreeChooser extends JPanel
     {
       matchGaps.setEnabled(false);
     }
+    if (tree.isSelected())
+    {
+      // ?? tree requires specific parameter settings??
+      includeGaps.setSelected(true);
+      includeGaps.setEnabled(false);
+      matchGaps.setSelected(true);
+      includeGappedColumns.setSelected(true);
+      includeGappedColumns.setEnabled(false);
+      shorterSequence.setSelected(false);
+      shorterSequence.setEnabled(false);
+    }
   }
 
   /**