JAL-1645 licencing for new files in src

[jalview.git] / src / jalview / jbgui / GAlignExportSettings.java

diff --git a/src/jalview/jbgui/GAlignExportSettings.java b/src/jalview/jbgui/GAlignExportSettings.java
index e3ac988..bf02e9e 100644 (file)
--- a/src/jalview/jbgui/GAlignExportSettings.java
+++ b/src/jalview/jbgui/GAlignExportSettings.java
@@ -1,3 +1,23 @@
+/*
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
+ * 
+ * This file is part of Jalview.
+ * 
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License 
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
+ *  
+ * Jalview is distributed in the hope that it will be useful, but 
+ * WITHOUT ANY WARRANTY; without even the implied warranty 
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
+ * PURPOSE.  See the GNU General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
+ */
 package jalview.jbgui;
 
 import jalview.util.MessageManager;
@@ -53,8 +73,7 @@ public abstract class GAlignExportSettings extends JPanel
   {
     this.hasHiddenSeq = hasHiddenSeq;
     this.hasHiddenCols = hasHiddenCols;
-    String[] complexFormats =
-    { "JSON", "HTML" };
+    String[] complexFormats = { "JSON", "HTML" };
 
     for (String format : complexFormats)
     {
@@ -114,7 +133,7 @@ public abstract class GAlignExportSettings extends JPanel
       }
     });
 
-    hiddenRegionConfPanel.add(chkAll, BorderLayout.NORTH);
+    // hiddenRegionConfPanel.add(chkAll, BorderLayout.NORTH);
     hiddenRegionConfPanel.add(chkHiddenSeqs, BorderLayout.CENTER);
     hiddenRegionConfPanel.add(chkHiddenCols, BorderLayout.SOUTH);
     chkHiddenSeqs.setEnabled(hasHiddenSeq);
@@ -124,15 +143,18 @@ public abstract class GAlignExportSettings extends JPanel
     complexExportPanel.add(chkExportFeats, BorderLayout.CENTER);
     complexExportPanel.add(chkExportGrps, BorderLayout.SOUTH);
 
-    if (hasHiddenSeq || hasHiddenCols)
-    {
-      optionsPanel.add(hiddenRegionConfPanel);
-    }
+    actionPanel.add(chkAll);
 
     if (this.isComplexAlignFile)
     {
       optionsPanel.add(complexExportPanel);
     }
+
+    if (hasHiddenSeq || hasHiddenCols)
+    {
+      optionsPanel.add(hiddenRegionConfPanel);
+    }
+
     actionPanel.add(btnCancel);
     actionPanel.add(btnOk);
 
@@ -140,7 +162,7 @@ public abstract class GAlignExportSettings extends JPanel
     add(actionPanel, BorderLayout.SOUTH);
 
   }
-  
+
   private void checkAllAction()
   {
     boolean isSelected = chkAll.isSelected();