/*\r
- * Jalview - A Sequence Alignment Editor and Viewer (Development Version 2.4.1)\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.4.1)\r
* Copyright (C) 2009 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle\r
* \r
* This program is free software; you can redistribute it and/or\r
*/\r
private java.lang.String _RGB;\r
\r
+ /**\r
+ * Field _minRGB.\r
+ */\r
+ private java.lang.String _minRGB;\r
+\r
+ /**\r
+ * loosely specified enumeration: NONE,ABOVE, or BELOW\r
+ */\r
+ private java.lang.String _threshType;\r
+\r
+ /**\r
+ * Field _threshold.\r
+ */\r
+ private float _threshold;\r
+\r
+ /**\r
+ * keeps track of state for field: _threshold\r
+ */\r
+ private boolean _has_threshold;\r
+\r
+ /**\r
+ * Field _max.\r
+ */\r
+ private float _max;\r
+\r
+ /**\r
+ * keeps track of state for field: _max\r
+ */\r
+ private boolean _has_max;\r
+\r
+ /**\r
+ * Field _min.\r
+ */\r
+ private float _min;\r
+\r
+ /**\r
+ * keeps track of state for field: _min\r
+ */\r
+ private boolean _has_min;\r
+\r
+ /**\r
+ * Field _colourByLabel.\r
+ */\r
+ private boolean _colourByLabel;\r
+\r
+ /**\r
+ * keeps track of state for field: _colourByLabel\r
+ */\r
+ private boolean _has_colourByLabel;\r
+\r
+ /**\r
+ * Field _autoScale.\r
+ */\r
+ private boolean _autoScale;\r
+\r
+ /**\r
+ * keeps track of state for field: _autoScale\r
+ */\r
+ private boolean _has_autoScale;\r
+\r
\r
//----------------/\r
//- Constructors -/\r
//-----------/\r
\r
/**\r
+ */\r
+ public void deleteAutoScale(\r
+ ) {\r
+ this._has_autoScale= false;\r
+ }\r
+\r
+ /**\r
+ */\r
+ public void deleteColourByLabel(\r
+ ) {\r
+ this._has_colourByLabel= false;\r
+ }\r
+\r
+ /**\r
+ */\r
+ public void deleteMax(\r
+ ) {\r
+ this._has_max= false;\r
+ }\r
+\r
+ /**\r
+ */\r
+ public void deleteMin(\r
+ ) {\r
+ this._has_min= false;\r
+ }\r
+\r
+ /**\r
+ */\r
+ public void deleteThreshold(\r
+ ) {\r
+ this._has_threshold= false;\r
+ }\r
+\r
+ /**\r
+ * Returns the value of field 'autoScale'.\r
+ * \r
+ * @return the value of field 'AutoScale'.\r
+ */\r
+ public boolean getAutoScale(\r
+ ) {\r
+ return this._autoScale;\r
+ }\r
+\r
+ /**\r
+ * Returns the value of field 'colourByLabel'.\r
+ * \r
+ * @return the value of field 'ColourByLabel'.\r
+ */\r
+ public boolean getColourByLabel(\r
+ ) {\r
+ return this._colourByLabel;\r
+ }\r
+\r
+ /**\r
+ * Returns the value of field 'max'.\r
+ * \r
+ * @return the value of field 'Max'.\r
+ */\r
+ public float getMax(\r
+ ) {\r
+ return this._max;\r
+ }\r
+\r
+ /**\r
+ * Returns the value of field 'min'.\r
+ * \r
+ * @return the value of field 'Min'.\r
+ */\r
+ public float getMin(\r
+ ) {\r
+ return this._min;\r
+ }\r
+\r
+ /**\r
+ * Returns the value of field 'minRGB'.\r
+ * \r
+ * @return the value of field 'MinRGB'.\r
+ */\r
+ public java.lang.String getMinRGB(\r
+ ) {\r
+ return this._minRGB;\r
+ }\r
+\r
+ /**\r
* Returns the value of field 'name'.\r
* \r
* @return the value of field 'Name'.\r
}\r
\r
/**\r
+ * Returns the value of field 'threshType'. The field\r
+ * 'threshType' has the following description: loosely\r
+ * specified enumeration: NONE,ABOVE, or BELOW\r
+ * \r
+ * @return the value of field 'ThreshType'.\r
+ */\r
+ public java.lang.String getThreshType(\r
+ ) {\r
+ return this._threshType;\r
+ }\r
+\r
+ /**\r
+ * Returns the value of field 'threshold'.\r
+ * \r
+ * @return the value of field 'Threshold'.\r
+ */\r
+ public float getThreshold(\r
+ ) {\r
+ return this._threshold;\r
+ }\r
+\r
+ /**\r
+ * Method hasAutoScale.\r
+ * \r
+ * @return true if at least one AutoScale has been added\r
+ */\r
+ public boolean hasAutoScale(\r
+ ) {\r
+ return this._has_autoScale;\r
+ }\r
+\r
+ /**\r
+ * Method hasColourByLabel.\r
+ * \r
+ * @return true if at least one ColourByLabel has been added\r
+ */\r
+ public boolean hasColourByLabel(\r
+ ) {\r
+ return this._has_colourByLabel;\r
+ }\r
+\r
+ /**\r
+ * Method hasMax.\r
+ * \r
+ * @return true if at least one Max has been added\r
+ */\r
+ public boolean hasMax(\r
+ ) {\r
+ return this._has_max;\r
+ }\r
+\r
+ /**\r
+ * Method hasMin.\r
+ * \r
+ * @return true if at least one Min has been added\r
+ */\r
+ public boolean hasMin(\r
+ ) {\r
+ return this._has_min;\r
+ }\r
+\r
+ /**\r
+ * Method hasThreshold.\r
+ * \r
+ * @return true if at least one Threshold has been added\r
+ */\r
+ public boolean hasThreshold(\r
+ ) {\r
+ return this._has_threshold;\r
+ }\r
+\r
+ /**\r
+ * Returns the value of field 'autoScale'.\r
+ * \r
+ * @return the value of field 'AutoScale'.\r
+ */\r
+ public boolean isAutoScale(\r
+ ) {\r
+ return this._autoScale;\r
+ }\r
+\r
+ /**\r
+ * Returns the value of field 'colourByLabel'.\r
+ * \r
+ * @return the value of field 'ColourByLabel'.\r
+ */\r
+ public boolean isColourByLabel(\r
+ ) {\r
+ return this._colourByLabel;\r
+ }\r
+\r
+ /**\r
* Method isValid.\r
* \r
* @return true if this object is valid according to the schema\r
}\r
\r
/**\r
+ * Sets the value of field 'autoScale'.\r
+ * \r
+ * @param autoScale the value of field 'autoScale'.\r
+ */\r
+ public void setAutoScale(\r
+ final boolean autoScale) {\r
+ this._autoScale = autoScale;\r
+ this._has_autoScale = true;\r
+ }\r
+\r
+ /**\r
+ * Sets the value of field 'colourByLabel'.\r
+ * \r
+ * @param colourByLabel the value of field 'colourByLabel'.\r
+ */\r
+ public void setColourByLabel(\r
+ final boolean colourByLabel) {\r
+ this._colourByLabel = colourByLabel;\r
+ this._has_colourByLabel = true;\r
+ }\r
+\r
+ /**\r
+ * Sets the value of field 'max'.\r
+ * \r
+ * @param max the value of field 'max'.\r
+ */\r
+ public void setMax(\r
+ final float max) {\r
+ this._max = max;\r
+ this._has_max = true;\r
+ }\r
+\r
+ /**\r
+ * Sets the value of field 'min'.\r
+ * \r
+ * @param min the value of field 'min'.\r
+ */\r
+ public void setMin(\r
+ final float min) {\r
+ this._min = min;\r
+ this._has_min = true;\r
+ }\r
+\r
+ /**\r
+ * Sets the value of field 'minRGB'.\r
+ * \r
+ * @param minRGB the value of field 'minRGB'.\r
+ */\r
+ public void setMinRGB(\r
+ final java.lang.String minRGB) {\r
+ this._minRGB = minRGB;\r
+ }\r
+\r
+ /**\r
* Sets the value of field 'name'.\r
* \r
* @param name the value of field 'name'.\r
}\r
\r
/**\r
+ * Sets the value of field 'threshType'. The field 'threshType'\r
+ * has the following description: loosely specified\r
+ * enumeration: NONE,ABOVE, or BELOW\r
+ * \r
+ * @param threshType the value of field 'threshType'.\r
+ */\r
+ public void setThreshType(\r
+ final java.lang.String threshType) {\r
+ this._threshType = threshType;\r
+ }\r
+\r
+ /**\r
+ * Sets the value of field 'threshold'.\r
+ * \r
+ * @param threshold the value of field 'threshold'.\r
+ */\r
+ public void setThreshold(\r
+ final float threshold) {\r
+ this._threshold = threshold;\r
+ this._has_threshold = true;\r
+ }\r
+\r
+ /**\r
* Method unmarshal.\r
* \r
* @param reader\r