extended Colour element with additional optional attributes for graduated colour
[jalview.git] / src / jalview / schemabinding / version2 / descriptors / AnnotationColoursDescriptor.java
index 4e606ed..dc652b9 100644 (file)
@@ -1,6 +1,6 @@
 /*\r
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.4)\r
- * Copyright (C) 2008 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.4.1)\r
+ * Copyright (C) 2009 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle\r
  * \r
  * This program is free software; you can redistribute it and/or\r
  * modify it under the terms of the GNU General Public License\r
@@ -18,9 +18,9 @@
  */\r
 package jalview.schemabinding.version2.descriptors;\r
 \r
-// ---------------------------------/\r
-// - Imported classes and packages -/\r
-// ---------------------------------/\r
+  //---------------------------------/\r
+ //- Imported classes and packages -/\r
+//---------------------------------/\r
 \r
 import jalview.schemabinding.version2.AnnotationColours;\r
 \r
@@ -29,447 +29,386 @@ import jalview.schemabinding.version2.AnnotationColours;
  * \r
  * @version $Revision$ $Date$\r
  */\r
-public class AnnotationColoursDescriptor extends\r
-        org.exolab.castor.xml.util.XMLClassDescriptorImpl\r
-{\r
-\r
-  // --------------------------/\r
-  // - Class/Member Variables -/\r
-  // --------------------------/\r
-\r
-  /**\r
-   * Field _elementDefinition.\r
-   */\r
-  private boolean _elementDefinition;\r
-\r
-  /**\r
-   * Field _nsPrefix.\r
-   */\r
-  private java.lang.String _nsPrefix;\r
-\r
-  /**\r
-   * Field _nsURI.\r
-   */\r
-  private java.lang.String _nsURI;\r
-\r
-  /**\r
-   * Field _xmlName.\r
-   */\r
-  private java.lang.String _xmlName;\r
-\r
-  // ----------------/\r
-  // - Constructors -/\r
-  // ----------------/\r
-\r
-  public AnnotationColoursDescriptor()\r
-  {\r
-    super();\r
-    _nsURI = "www.jalview.org";\r
-    _xmlName = "AnnotationColours";\r
-    _elementDefinition = true;\r
-    org.exolab.castor.xml.util.XMLFieldDescriptorImpl desc = null;\r
-    org.exolab.castor.mapping.FieldHandler handler = null;\r
-    org.exolab.castor.xml.FieldValidator fieldValidator = null;\r
-    // -- initialize attribute descriptors\r
-\r
-    // -- _aboveThreshold\r
-    desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(\r
-            java.lang.Integer.TYPE, "_aboveThreshold", "aboveThreshold",\r
-            org.exolab.castor.xml.NodeType.Attribute);\r
-    handler = new org.exolab.castor.xml.XMLFieldHandler()\r
-    {\r
-      public java.lang.Object getValue(java.lang.Object object)\r
-              throws IllegalStateException\r
-      {\r
-        AnnotationColours target = (AnnotationColours) object;\r
-        if (!target.hasAboveThreshold())\r
-        {\r
-          return null;\r
+public class AnnotationColoursDescriptor extends org.exolab.castor.xml.util.XMLClassDescriptorImpl {\r
+\r
+\r
+      //--------------------------/\r
+     //- Class/Member Variables -/\r
+    //--------------------------/\r
+\r
+    /**\r
+     * Field _elementDefinition.\r
+     */\r
+    private boolean _elementDefinition;\r
+\r
+    /**\r
+     * Field _nsPrefix.\r
+     */\r
+    private java.lang.String _nsPrefix;\r
+\r
+    /**\r
+     * Field _nsURI.\r
+     */\r
+    private java.lang.String _nsURI;\r
+\r
+    /**\r
+     * Field _xmlName.\r
+     */\r
+    private java.lang.String _xmlName;\r
+\r
+\r
+      //----------------/\r
+     //- Constructors -/\r
+    //----------------/\r
+\r
+    public AnnotationColoursDescriptor() {\r
+        super();\r
+        _nsURI = "www.jalview.org";\r
+        _xmlName = "AnnotationColours";\r
+        _elementDefinition = true;\r
+        org.exolab.castor.xml.util.XMLFieldDescriptorImpl  desc           = null;\r
+        org.exolab.castor.mapping.FieldHandler             handler        = null;\r
+        org.exolab.castor.xml.FieldValidator               fieldValidator = null;\r
+        //-- initialize attribute descriptors\r
+        \r
+        //-- _aboveThreshold\r
+        desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Integer.TYPE, "_aboveThreshold", "aboveThreshold", org.exolab.castor.xml.NodeType.Attribute);\r
+        handler = new org.exolab.castor.xml.XMLFieldHandler() {\r
+            public java.lang.Object getValue( java.lang.Object object ) \r
+                throws IllegalStateException\r
+            {\r
+                AnnotationColours target = (AnnotationColours) object;\r
+                if (!target.hasAboveThreshold()) { return null; }\r
+                return new java.lang.Integer(target.getAboveThreshold());\r
+            }\r
+            public void setValue( java.lang.Object object, java.lang.Object value) \r
+                throws IllegalStateException, IllegalArgumentException\r
+            {\r
+                try {\r
+                    AnnotationColours target = (AnnotationColours) object;\r
+                    // if null, use delete method for optional primitives \r
+                    if (value == null) {\r
+                        target.deleteAboveThreshold();\r
+                        return;\r
+                    }\r
+                    target.setAboveThreshold( ((java.lang.Integer) value).intValue());\r
+                } catch (java.lang.Exception ex) {\r
+                    throw new IllegalStateException(ex.toString());\r
+                }\r
+            }\r
+            public java.lang.Object newInstance(java.lang.Object parent) {\r
+                return null;\r
+            }\r
+        };\r
+        desc.setHandler(handler);\r
+        desc.setMultivalued(false);\r
+        addFieldDescriptor(desc);\r
+        \r
+        //-- validation code for: _aboveThreshold\r
+        fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
+        { //-- local scope\r
+            org.exolab.castor.xml.validators.IntValidator typeValidator;\r
+            typeValidator = new org.exolab.castor.xml.validators.IntValidator();\r
+            fieldValidator.setValidator(typeValidator);\r
+            typeValidator.setMinInclusive(-2147483648);\r
+            typeValidator.setMaxInclusive(2147483647);\r
         }\r
-        return new java.lang.Integer(target.getAboveThreshold());\r
-      }\r
-\r
-      public void setValue(java.lang.Object object, java.lang.Object value)\r
-              throws IllegalStateException, IllegalArgumentException\r
-      {\r
-        try\r
-        {\r
-          AnnotationColours target = (AnnotationColours) object;\r
-          // if null, use delete method for optional primitives\r
-          if (value == null)\r
-          {\r
-            target.deleteAboveThreshold();\r
-            return;\r
-          }\r
-          target.setAboveThreshold(((java.lang.Integer) value).intValue());\r
-        } catch (java.lang.Exception ex)\r
-        {\r
-          throw new IllegalStateException(ex.toString());\r
+        desc.setValidator(fieldValidator);\r
+        //-- _annotation\r
+        desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.String.class, "_annotation", "annotation", org.exolab.castor.xml.NodeType.Attribute);\r
+        desc.setImmutable(true);\r
+        handler = new org.exolab.castor.xml.XMLFieldHandler() {\r
+            public java.lang.Object getValue( java.lang.Object object ) \r
+                throws IllegalStateException\r
+            {\r
+                AnnotationColours target = (AnnotationColours) object;\r
+                return target.getAnnotation();\r
+            }\r
+            public void setValue( java.lang.Object object, java.lang.Object value) \r
+                throws IllegalStateException, IllegalArgumentException\r
+            {\r
+                try {\r
+                    AnnotationColours target = (AnnotationColours) object;\r
+                    target.setAnnotation( (java.lang.String) value);\r
+                } catch (java.lang.Exception ex) {\r
+                    throw new IllegalStateException(ex.toString());\r
+                }\r
+            }\r
+            public java.lang.Object newInstance(java.lang.Object parent) {\r
+                return null;\r
+            }\r
+        };\r
+        desc.setHandler(handler);\r
+        desc.setMultivalued(false);\r
+        addFieldDescriptor(desc);\r
+        \r
+        //-- validation code for: _annotation\r
+        fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
+        { //-- local scope\r
+            org.exolab.castor.xml.validators.StringValidator typeValidator;\r
+            typeValidator = new org.exolab.castor.xml.validators.StringValidator();\r
+            fieldValidator.setValidator(typeValidator);\r
+            typeValidator.setWhiteSpace("preserve");\r
         }\r
-      }\r
-\r
-      public java.lang.Object newInstance(java.lang.Object parent)\r
-      {\r
-        return null;\r
-      }\r
-    };\r
-    desc.setHandler(handler);\r
-    desc.setMultivalued(false);\r
-    addFieldDescriptor(desc);\r
-\r
-    // -- validation code for: _aboveThreshold\r
-    fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
-    { // -- local scope\r
-      org.exolab.castor.xml.validators.IntValidator typeValidator;\r
-      typeValidator = new org.exolab.castor.xml.validators.IntValidator();\r
-      fieldValidator.setValidator(typeValidator);\r
-      typeValidator.setMinInclusive(-2147483648);\r
-      typeValidator.setMaxInclusive(2147483647);\r
-    }\r
-    desc.setValidator(fieldValidator);\r
-    // -- _annotation\r
-    desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(\r
-            java.lang.String.class, "_annotation", "annotation",\r
-            org.exolab.castor.xml.NodeType.Attribute);\r
-    desc.setImmutable(true);\r
-    handler = new org.exolab.castor.xml.XMLFieldHandler()\r
-    {\r
-      public java.lang.Object getValue(java.lang.Object object)\r
-              throws IllegalStateException\r
-      {\r
-        AnnotationColours target = (AnnotationColours) object;\r
-        return target.getAnnotation();\r
-      }\r
-\r
-      public void setValue(java.lang.Object object, java.lang.Object value)\r
-              throws IllegalStateException, IllegalArgumentException\r
-      {\r
-        try\r
-        {\r
-          AnnotationColours target = (AnnotationColours) object;\r
-          target.setAnnotation((java.lang.String) value);\r
-        } catch (java.lang.Exception ex)\r
-        {\r
-          throw new IllegalStateException(ex.toString());\r
+        desc.setValidator(fieldValidator);\r
+        //-- _minColour\r
+        desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Integer.TYPE, "_minColour", "minColour", org.exolab.castor.xml.NodeType.Attribute);\r
+        handler = new org.exolab.castor.xml.XMLFieldHandler() {\r
+            public java.lang.Object getValue( java.lang.Object object ) \r
+                throws IllegalStateException\r
+            {\r
+                AnnotationColours target = (AnnotationColours) object;\r
+                if (!target.hasMinColour()) { return null; }\r
+                return new java.lang.Integer(target.getMinColour());\r
+            }\r
+            public void setValue( java.lang.Object object, java.lang.Object value) \r
+                throws IllegalStateException, IllegalArgumentException\r
+            {\r
+                try {\r
+                    AnnotationColours target = (AnnotationColours) object;\r
+                    // if null, use delete method for optional primitives \r
+                    if (value == null) {\r
+                        target.deleteMinColour();\r
+                        return;\r
+                    }\r
+                    target.setMinColour( ((java.lang.Integer) value).intValue());\r
+                } catch (java.lang.Exception ex) {\r
+                    throw new IllegalStateException(ex.toString());\r
+                }\r
+            }\r
+            public java.lang.Object newInstance(java.lang.Object parent) {\r
+                return null;\r
+            }\r
+        };\r
+        desc.setHandler(handler);\r
+        desc.setMultivalued(false);\r
+        addFieldDescriptor(desc);\r
+        \r
+        //-- validation code for: _minColour\r
+        fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
+        { //-- local scope\r
+            org.exolab.castor.xml.validators.IntValidator typeValidator;\r
+            typeValidator = new org.exolab.castor.xml.validators.IntValidator();\r
+            fieldValidator.setValidator(typeValidator);\r
+            typeValidator.setMinInclusive(-2147483648);\r
+            typeValidator.setMaxInclusive(2147483647);\r
         }\r
-      }\r
-\r
-      public java.lang.Object newInstance(java.lang.Object parent)\r
-      {\r
-        return null;\r
-      }\r
-    };\r
-    desc.setHandler(handler);\r
-    desc.setMultivalued(false);\r
-    addFieldDescriptor(desc);\r
-\r
-    // -- validation code for: _annotation\r
-    fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
-    { // -- local scope\r
-      org.exolab.castor.xml.validators.StringValidator typeValidator;\r
-      typeValidator = new org.exolab.castor.xml.validators.StringValidator();\r
-      fieldValidator.setValidator(typeValidator);\r
-      typeValidator.setWhiteSpace("preserve");\r
-    }\r
-    desc.setValidator(fieldValidator);\r
-    // -- _minColour\r
-    desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(\r
-            java.lang.Integer.TYPE, "_minColour", "minColour",\r
-            org.exolab.castor.xml.NodeType.Attribute);\r
-    handler = new org.exolab.castor.xml.XMLFieldHandler()\r
-    {\r
-      public java.lang.Object getValue(java.lang.Object object)\r
-              throws IllegalStateException\r
-      {\r
-        AnnotationColours target = (AnnotationColours) object;\r
-        if (!target.hasMinColour())\r
-        {\r
-          return null;\r
+        desc.setValidator(fieldValidator);\r
+        //-- _maxColour\r
+        desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Integer.TYPE, "_maxColour", "maxColour", org.exolab.castor.xml.NodeType.Attribute);\r
+        handler = new org.exolab.castor.xml.XMLFieldHandler() {\r
+            public java.lang.Object getValue( java.lang.Object object ) \r
+                throws IllegalStateException\r
+            {\r
+                AnnotationColours target = (AnnotationColours) object;\r
+                if (!target.hasMaxColour()) { return null; }\r
+                return new java.lang.Integer(target.getMaxColour());\r
+            }\r
+            public void setValue( java.lang.Object object, java.lang.Object value) \r
+                throws IllegalStateException, IllegalArgumentException\r
+            {\r
+                try {\r
+                    AnnotationColours target = (AnnotationColours) object;\r
+                    // if null, use delete method for optional primitives \r
+                    if (value == null) {\r
+                        target.deleteMaxColour();\r
+                        return;\r
+                    }\r
+                    target.setMaxColour( ((java.lang.Integer) value).intValue());\r
+                } catch (java.lang.Exception ex) {\r
+                    throw new IllegalStateException(ex.toString());\r
+                }\r
+            }\r
+            public java.lang.Object newInstance(java.lang.Object parent) {\r
+                return null;\r
+            }\r
+        };\r
+        desc.setHandler(handler);\r
+        desc.setMultivalued(false);\r
+        addFieldDescriptor(desc);\r
+        \r
+        //-- validation code for: _maxColour\r
+        fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
+        { //-- local scope\r
+            org.exolab.castor.xml.validators.IntValidator typeValidator;\r
+            typeValidator = new org.exolab.castor.xml.validators.IntValidator();\r
+            fieldValidator.setValidator(typeValidator);\r
+            typeValidator.setMinInclusive(-2147483648);\r
+            typeValidator.setMaxInclusive(2147483647);\r
         }\r
-        return new java.lang.Integer(target.getMinColour());\r
-      }\r
-\r
-      public void setValue(java.lang.Object object, java.lang.Object value)\r
-              throws IllegalStateException, IllegalArgumentException\r
-      {\r
-        try\r
-        {\r
-          AnnotationColours target = (AnnotationColours) object;\r
-          // if null, use delete method for optional primitives\r
-          if (value == null)\r
-          {\r
-            target.deleteMinColour();\r
-            return;\r
-          }\r
-          target.setMinColour(((java.lang.Integer) value).intValue());\r
-        } catch (java.lang.Exception ex)\r
-        {\r
-          throw new IllegalStateException(ex.toString());\r
-        }\r
-      }\r
-\r
-      public java.lang.Object newInstance(java.lang.Object parent)\r
-      {\r
-        return null;\r
-      }\r
-    };\r
-    desc.setHandler(handler);\r
-    desc.setMultivalued(false);\r
-    addFieldDescriptor(desc);\r
-\r
-    // -- validation code for: _minColour\r
-    fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
-    { // -- local scope\r
-      org.exolab.castor.xml.validators.IntValidator typeValidator;\r
-      typeValidator = new org.exolab.castor.xml.validators.IntValidator();\r
-      fieldValidator.setValidator(typeValidator);\r
-      typeValidator.setMinInclusive(-2147483648);\r
-      typeValidator.setMaxInclusive(2147483647);\r
-    }\r
-    desc.setValidator(fieldValidator);\r
-    // -- _maxColour\r
-    desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(\r
-            java.lang.Integer.TYPE, "_maxColour", "maxColour",\r
-            org.exolab.castor.xml.NodeType.Attribute);\r
-    handler = new org.exolab.castor.xml.XMLFieldHandler()\r
-    {\r
-      public java.lang.Object getValue(java.lang.Object object)\r
-              throws IllegalStateException\r
-      {\r
-        AnnotationColours target = (AnnotationColours) object;\r
-        if (!target.hasMaxColour())\r
-        {\r
-          return null;\r
+        desc.setValidator(fieldValidator);\r
+        //-- _colourScheme\r
+        desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.String.class, "_colourScheme", "colourScheme", org.exolab.castor.xml.NodeType.Attribute);\r
+        desc.setImmutable(true);\r
+        handler = new org.exolab.castor.xml.XMLFieldHandler() {\r
+            public java.lang.Object getValue( java.lang.Object object ) \r
+                throws IllegalStateException\r
+            {\r
+                AnnotationColours target = (AnnotationColours) object;\r
+                return target.getColourScheme();\r
+            }\r
+            public void setValue( java.lang.Object object, java.lang.Object value) \r
+                throws IllegalStateException, IllegalArgumentException\r
+            {\r
+                try {\r
+                    AnnotationColours target = (AnnotationColours) object;\r
+                    target.setColourScheme( (java.lang.String) value);\r
+                } catch (java.lang.Exception ex) {\r
+                    throw new IllegalStateException(ex.toString());\r
+                }\r
+            }\r
+            public java.lang.Object newInstance(java.lang.Object parent) {\r
+                return null;\r
+            }\r
+        };\r
+        desc.setHandler(handler);\r
+        desc.setMultivalued(false);\r
+        addFieldDescriptor(desc);\r
+        \r
+        //-- validation code for: _colourScheme\r
+        fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
+        { //-- local scope\r
+            org.exolab.castor.xml.validators.StringValidator typeValidator;\r
+            typeValidator = new org.exolab.castor.xml.validators.StringValidator();\r
+            fieldValidator.setValidator(typeValidator);\r
+            typeValidator.setWhiteSpace("preserve");\r
         }\r
-        return new java.lang.Integer(target.getMaxColour());\r
-      }\r
-\r
-      public void setValue(java.lang.Object object, java.lang.Object value)\r
-              throws IllegalStateException, IllegalArgumentException\r
-      {\r
-        try\r
-        {\r
-          AnnotationColours target = (AnnotationColours) object;\r
-          // if null, use delete method for optional primitives\r
-          if (value == null)\r
-          {\r
-            target.deleteMaxColour();\r
-            return;\r
-          }\r
-          target.setMaxColour(((java.lang.Integer) value).intValue());\r
-        } catch (java.lang.Exception ex)\r
-        {\r
-          throw new IllegalStateException(ex.toString());\r
+        desc.setValidator(fieldValidator);\r
+        //-- _threshold\r
+        desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Float.TYPE, "_threshold", "threshold", org.exolab.castor.xml.NodeType.Attribute);\r
+        handler = new org.exolab.castor.xml.XMLFieldHandler() {\r
+            public java.lang.Object getValue( java.lang.Object object ) \r
+                throws IllegalStateException\r
+            {\r
+                AnnotationColours target = (AnnotationColours) object;\r
+                if (!target.hasThreshold()) { return null; }\r
+                return new java.lang.Float(target.getThreshold());\r
+            }\r
+            public void setValue( java.lang.Object object, java.lang.Object value) \r
+                throws IllegalStateException, IllegalArgumentException\r
+            {\r
+                try {\r
+                    AnnotationColours target = (AnnotationColours) object;\r
+                    // if null, use delete method for optional primitives \r
+                    if (value == null) {\r
+                        target.deleteThreshold();\r
+                        return;\r
+                    }\r
+                    target.setThreshold( ((java.lang.Float) value).floatValue());\r
+                } catch (java.lang.Exception ex) {\r
+                    throw new IllegalStateException(ex.toString());\r
+                }\r
+            }\r
+            public java.lang.Object newInstance(java.lang.Object parent) {\r
+                return null;\r
+            }\r
+        };\r
+        desc.setHandler(handler);\r
+        desc.setMultivalued(false);\r
+        addFieldDescriptor(desc);\r
+        \r
+        //-- validation code for: _threshold\r
+        fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
+        { //-- local scope\r
+            org.exolab.castor.xml.validators.FloatValidator typeValidator;\r
+            typeValidator = new org.exolab.castor.xml.validators.FloatValidator();\r
+            fieldValidator.setValidator(typeValidator);\r
+            typeValidator.setMinInclusive((float) -3.4028235E38);\r
+            typeValidator.setMaxInclusive((float) 3.4028235E38);\r
         }\r
-      }\r
-\r
-      public java.lang.Object newInstance(java.lang.Object parent)\r
-      {\r
-        return null;\r
-      }\r
-    };\r
-    desc.setHandler(handler);\r
-    desc.setMultivalued(false);\r
-    addFieldDescriptor(desc);\r
-\r
-    // -- validation code for: _maxColour\r
-    fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
-    { // -- local scope\r
-      org.exolab.castor.xml.validators.IntValidator typeValidator;\r
-      typeValidator = new org.exolab.castor.xml.validators.IntValidator();\r
-      fieldValidator.setValidator(typeValidator);\r
-      typeValidator.setMinInclusive(-2147483648);\r
-      typeValidator.setMaxInclusive(2147483647);\r
+        desc.setValidator(fieldValidator);\r
+        //-- initialize element descriptors\r
+        \r
     }\r
-    desc.setValidator(fieldValidator);\r
-    // -- _colourScheme\r
-    desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(\r
-            java.lang.String.class, "_colourScheme", "colourScheme",\r
-            org.exolab.castor.xml.NodeType.Attribute);\r
-    desc.setImmutable(true);\r
-    handler = new org.exolab.castor.xml.XMLFieldHandler()\r
-    {\r
-      public java.lang.Object getValue(java.lang.Object object)\r
-              throws IllegalStateException\r
-      {\r
-        AnnotationColours target = (AnnotationColours) object;\r
-        return target.getColourScheme();\r
-      }\r
-\r
-      public void setValue(java.lang.Object object, java.lang.Object value)\r
-              throws IllegalStateException, IllegalArgumentException\r
-      {\r
-        try\r
-        {\r
-          AnnotationColours target = (AnnotationColours) object;\r
-          target.setColourScheme((java.lang.String) value);\r
-        } catch (java.lang.Exception ex)\r
-        {\r
-          throw new IllegalStateException(ex.toString());\r
-        }\r
-      }\r
-\r
-      public java.lang.Object newInstance(java.lang.Object parent)\r
-      {\r
-        return null;\r
-      }\r
-    };\r
-    desc.setHandler(handler);\r
-    desc.setMultivalued(false);\r
-    addFieldDescriptor(desc);\r
 \r
-    // -- validation code for: _colourScheme\r
-    fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
-    { // -- local scope\r
-      org.exolab.castor.xml.validators.StringValidator typeValidator;\r
-      typeValidator = new org.exolab.castor.xml.validators.StringValidator();\r
-      fieldValidator.setValidator(typeValidator);\r
-      typeValidator.setWhiteSpace("preserve");\r
-    }\r
-    desc.setValidator(fieldValidator);\r
-    // -- _threshold\r
-    desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(\r
-            java.lang.Float.TYPE, "_threshold", "threshold",\r
-            org.exolab.castor.xml.NodeType.Attribute);\r
-    handler = new org.exolab.castor.xml.XMLFieldHandler()\r
-    {\r
-      public java.lang.Object getValue(java.lang.Object object)\r
-              throws IllegalStateException\r
-      {\r
-        AnnotationColours target = (AnnotationColours) object;\r
-        if (!target.hasThreshold())\r
-        {\r
-          return null;\r
-        }\r
-        return new java.lang.Float(target.getThreshold());\r
-      }\r
 \r
-      public void setValue(java.lang.Object object, java.lang.Object value)\r
-              throws IllegalStateException, IllegalArgumentException\r
-      {\r
-        try\r
-        {\r
-          AnnotationColours target = (AnnotationColours) object;\r
-          // if null, use delete method for optional primitives\r
-          if (value == null)\r
-          {\r
-            target.deleteThreshold();\r
-            return;\r
-          }\r
-          target.setThreshold(((java.lang.Float) value).floatValue());\r
-        } catch (java.lang.Exception ex)\r
-        {\r
-          throw new IllegalStateException(ex.toString());\r
-        }\r
-      }\r
+      //-----------/\r
+     //- Methods -/\r
+    //-----------/\r
 \r
-      public java.lang.Object newInstance(java.lang.Object parent)\r
-      {\r
+    /**\r
+     * Method getAccessMode.\r
+     * \r
+     * @return the access mode specified for this class.\r
+     */\r
+    public org.exolab.castor.mapping.AccessMode getAccessMode(\r
+    ) {\r
         return null;\r
-      }\r
-    };\r
-    desc.setHandler(handler);\r
-    desc.setMultivalued(false);\r
-    addFieldDescriptor(desc);\r
-\r
-    // -- validation code for: _threshold\r
-    fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
-    { // -- local scope\r
-      org.exolab.castor.xml.validators.FloatValidator typeValidator;\r
-      typeValidator = new org.exolab.castor.xml.validators.FloatValidator();\r
-      fieldValidator.setValidator(typeValidator);\r
-      typeValidator.setMinInclusive((float) -3.4028235E38);\r
-      typeValidator.setMaxInclusive((float) 3.4028235E38);\r
     }\r
-    desc.setValidator(fieldValidator);\r
-    // -- initialize element descriptors\r
-\r
-  }\r
-\r
-  // -----------/\r
-  // - Methods -/\r
-  // -----------/\r
 \r
-  /**\r
-   * Method getAccessMode.\r
-   * \r
-   * @return the access mode specified for this class.\r
-   */\r
-  public org.exolab.castor.mapping.AccessMode getAccessMode()\r
-  {\r
-    return null;\r
-  }\r
-\r
-  /**\r
-   * Method getIdentity.\r
-   * \r
-   * @return the identity field, null if this class has no identity.\r
-   */\r
-  public org.exolab.castor.mapping.FieldDescriptor getIdentity()\r
-  {\r
-    return super.getIdentity();\r
-  }\r
+    /**\r
+     * Method getIdentity.\r
+     * \r
+     * @return the identity field, null if this class has no\r
+     * identity.\r
+     */\r
+    public org.exolab.castor.mapping.FieldDescriptor getIdentity(\r
+    ) {\r
+        return super.getIdentity();\r
+    }\r
 \r
-  /**\r
-   * Method getJavaClass.\r
-   * \r
-   * @return the Java class represented by this descriptor.\r
-   */\r
-  public java.lang.Class getJavaClass()\r
-  {\r
-    return jalview.schemabinding.version2.AnnotationColours.class;\r
-  }\r
+    /**\r
+     * Method getJavaClass.\r
+     * \r
+     * @return the Java class represented by this descriptor.\r
+     */\r
+    public java.lang.Class getJavaClass(\r
+    ) {\r
+        return jalview.schemabinding.version2.AnnotationColours.class;\r
+    }\r
 \r
-  /**\r
-   * Method getNameSpacePrefix.\r
-   * \r
-   * @return the namespace prefix to use when marshaling as XML.\r
-   */\r
-  public java.lang.String getNameSpacePrefix()\r
-  {\r
-    return _nsPrefix;\r
-  }\r
+    /**\r
+     * Method getNameSpacePrefix.\r
+     * \r
+     * @return the namespace prefix to use when marshaling as XML.\r
+     */\r
+    public java.lang.String getNameSpacePrefix(\r
+    ) {\r
+        return _nsPrefix;\r
+    }\r
 \r
-  /**\r
-   * Method getNameSpaceURI.\r
-   * \r
-   * @return the namespace URI used when marshaling and unmarshaling as XML.\r
-   */\r
-  public java.lang.String getNameSpaceURI()\r
-  {\r
-    return _nsURI;\r
-  }\r
+    /**\r
+     * Method getNameSpaceURI.\r
+     * \r
+     * @return the namespace URI used when marshaling and\r
+     * unmarshaling as XML.\r
+     */\r
+    public java.lang.String getNameSpaceURI(\r
+    ) {\r
+        return _nsURI;\r
+    }\r
 \r
-  /**\r
-   * Method getValidator.\r
-   * \r
-   * @return a specific validator for the class described by this\r
-   *         ClassDescriptor.\r
-   */\r
-  public org.exolab.castor.xml.TypeValidator getValidator()\r
-  {\r
-    return this;\r
-  }\r
+    /**\r
+     * Method getValidator.\r
+     * \r
+     * @return a specific validator for the class described by this\r
+     * ClassDescriptor.\r
+     */\r
+    public org.exolab.castor.xml.TypeValidator getValidator(\r
+    ) {\r
+        return this;\r
+    }\r
 \r
-  /**\r
-   * Method getXMLName.\r
-   * \r
-   * @return the XML Name for the Class being described.\r
-   */\r
-  public java.lang.String getXMLName()\r
-  {\r
-    return _xmlName;\r
-  }\r
+    /**\r
+     * Method getXMLName.\r
+     * \r
+     * @return the XML Name for the Class being described.\r
+     */\r
+    public java.lang.String getXMLName(\r
+    ) {\r
+        return _xmlName;\r
+    }\r
 \r
-  /**\r
-   * Method isElementDefinition.\r
-   * \r
-   * @return true if XML schema definition of this Class is that of a global\r
-   *         element or element with anonymous type definition.\r
-   */\r
-  public boolean isElementDefinition()\r
-  {\r
-    return _elementDefinition;\r
-  }\r
+    /**\r
+     * Method isElementDefinition.\r
+     * \r
+     * @return true if XML schema definition of this Class is that\r
+     * of a global\r
+     * element or element with anonymous type definition.\r
+     */\r
+    public boolean isElementDefinition(\r
+    ) {\r
+        return _elementDefinition;\r
+    }\r
 \r
 }\r