/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.4)
- * Copyright (C) 2008 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Copyright (C) 2014 The Jalview Authors
*
- * This program is free software; you can redistribute it and/or
- * modify it under the terms of the GNU General Public License
- * as published by the Free Software Foundation; either version 2
- * of the License, or (at your option) any later version.
+ * This file is part of Jalview.
*
- * This program is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- * GNU General Public License for more details.
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License
+ * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
+ *
+ * Jalview is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
+ * PURPOSE. See the GNU General Public License for more details.
*
- * You should have received a copy of the GNU General Public License
- * along with this program; if not, write to the Free Software
- * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
+ * You should have received a copy of the GNU General Public License along with Jalview. If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
*/
package jalview.structure;
public interface StructureListener
{
- public String getPdbFile();
+ /**
+ *
+ * @return list of structure files (unique IDs/filenames) that this listener
+ * handles messages for, or null if generic listener (only used by
+ * removeListener method)
+ */
+ public String[] getPdbFile();
+ /**
+ * NOT A LISTENER METHOD! called by structure viewer when the given
+ * atom/structure has been moused over. Typically, implementors call
+ * StructureSelectionManager.mouseOverStructure
+ *
+ * @param atomIndex
+ * @param strInfo
+ */
public void mouseOverStructure(int atomIndex, String strInfo);
+ /**
+ * called by StructureSelectionManager to inform viewer to highlight given
+ * atomspec
+ *
+ * @param atomIndex
+ * @param pdbResNum
+ * @param chain
+ * @param pdbId
+ */
public void highlightAtom(int atomIndex, int pdbResNum, String chain,
String pdbId);
+ /**
+ * called by StructureSelectionManager when the colours of a sequence
+ * associated with a structure have changed.
+ *
+ * @param source
+ * (untyped) usually an alignPanel
+ */
public void updateColours(Object source);
+ /**
+ * called by Jalview to get the colour for the given atomspec
+ *
+ * @param atomIndex
+ * @param pdbResNum
+ * @param chain
+ * @param pdbId
+ * @return
+ */
public java.awt.Color getColour(int atomIndex, int pdbResNum,
String chain, String pdbId);
+
+ /**
+ * called by structureSelectionManager to instruct implementor to release any
+ * direct references it may hold to the given object (typically, these are
+ * Jalview alignment panels).
+ *
+ * @param svl
+ */
+ public void releaseReferences(Object svl);
}