JAL-3417 access to consensus,conservation,cdsprofile and rnastrucconsensus calculatio...

[jalview.git] / src / jalview / viewmodel / AlignmentViewport.java

diff --git a/src/jalview/viewmodel/AlignmentViewport.java b/src/jalview/viewmodel/AlignmentViewport.java
index 8dcd1b3..979f6ad 100644 (file)
--- a/src/jalview/viewmodel/AlignmentViewport.java
+++ b/src/jalview/viewmodel/AlignmentViewport.java
@@ -722,6 +722,7 @@ public abstract class AlignmentViewport
   @Override
   public void setConservation(Conservation cons)
   {
+    alignment.setConservation(cons);
     hconservation = cons;
   }
 
@@ -740,12 +741,14 @@ public abstract class AlignmentViewport
   @Override
   public void setSequenceConsensusHash(ProfilesI hconsensus)
   {
+    alignment.setSequenceConsensusHash(hconsensus);
     this.hconsensus = hconsensus;
   }
 
   @Override
   public void setComplementConsensusHash(Hashtable[] hconsensus)
   {
+    alignment.setComplementConsensusHash(hconsensus);
     this.hcomplementConsensus = hconsensus;
   }
 
@@ -770,6 +773,7 @@ public abstract class AlignmentViewport
   @Override
   public void setRnaStructureConsensusHash(Hashtable[] hStrucConsensus)
   {
+    alignment.setRnaStructureConsensusHash(hStrucConsensus);
     this.hStrucConsensus = hStrucConsensus;
 
   }