/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
public class ConsensusThread extends AlignCalcWorker implements
AlignCalcWorkerI
{
- private long nseq=-1;
+ private long nseq = -1;
public ConsensusThread(AlignViewportI alignViewport,
AlignmentViewPanel alignPanel)
if (alignViewport.isClosed())
{
abortAndDestroy();
+ return;
}
AlignmentI alignment = alignViewport.getAlignment();
{
SequenceI aseqs[] = alignment.getSequencesArray();
nseq = aseqs.length;
- AAFrequency.calculate(aseqs, 0,
- alignment.getWidth(), hconsensus, true);
+ AAFrequency.calculate(aseqs, 0, alignment.getWidth(), hconsensus,
+ true);
} catch (ArrayIndexOutOfBoundsException x)
{
// this happens due to a race condition -