+/*
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
+ * Copyright (C) 2014 The Jalview Authors
+ *
+ * This file is part of Jalview.
+ *
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
+ *
+ * Jalview is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
+ * PURPOSE. See the GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview. If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
+ */
package jalview.ws.rest.params;
-import jalview.datamodel.AlignmentI;
+import jalview.util.MessageManager;
+import jalview.ws.params.OptionI;
import jalview.ws.rest.InputType;
import jalview.ws.rest.RestJob;
import java.io.UnsupportedEncodingException;
+import java.util.ArrayList;
+import java.util.List;
import org.apache.http.entity.mime.content.ContentBody;
/**
* format a tree for input to a rest service
+ *
* @author JimP
- *
+ *
*/
-class Tree extends InputType {
+public class Tree extends InputType
+{
public Tree()
{
- super(new Class[] { jalview.analysis.NJTree.class} );
+ super(new Class[]
+ { jalview.analysis.NJTree.class });
}
// TODO specify modifiers for tree output format
@Override
- public ContentBody formatForInput(RestJob rj) throws UnsupportedEncodingException
+ public ContentBody formatForInput(RestJob rj)
+ throws UnsupportedEncodingException
{
// TODO: implement tree inputType
- /*rj.getTreeForInput(token);
- return new StringBody(new ) */
- throw new Error("Tree InputType not yet implemented");
- //return null;
+ /*
+ * rj.getTreeForInput(token); return new StringBody(new )
+ */
+ throw new Error(MessageManager.getString("error.tree_inputtype_not_yet_implemented"));
+ // return null;
}
-
-}
\ No newline at end of file
+
+ public String getURLtokenPrefix()
+ {
+ return "NEWICK";
+ }
+
+ @Override
+ public List<String> getURLEncodedParameter()
+ {
+ ArrayList<String> prms = new ArrayList<String>();
+ super.addBaseParams(prms);
+ return prms;
+ }
+
+ @Override
+ public boolean configureProperty(String tok, String val,
+ StringBuffer warnings)
+ {
+ return true;
+ }
+
+ @Override
+ public List<OptionI> getOptions()
+ {
+ return getBaseOptions();
+ }
+
+}