*/
package org.biojava.dasobert.dasregistry;
-
-/** a Bean to be returned via SOAP. It takes care of the DAS - coordinate Systems
+/** a Bean to be returned via SOAP. It takes care of the DAS - coordinate Systems
* @author Andreas Prlic
*/
-public class DasCoordinateSystem {
-
- String name;
- String category;
- String organism_name;
- int ncbi_tax_id ;
- String uniqueId ;
- String version;
- String testCode;
-
- public DasCoordinateSystem () {
- uniqueId = "";
- name = "";
- category ="";
- organism_name = "";
- ncbi_tax_id = 0;
- version = "";
- testCode = "";
+public class DasCoordinateSystem
+{
+
+ String name;
+ String category;
+ String organism_name;
+ int ncbi_tax_id;
+ String uniqueId;
+ String version;
+ String testCode;
+
+ public DasCoordinateSystem()
+ {
+ uniqueId = "";
+ name = "";
+ category = "";
+ organism_name = "";
+ ncbi_tax_id = 0;
+ version = "";
+ testCode = "";
+ }
+
+ public boolean equals(DasCoordinateSystem other)
+ {
+ boolean match = true;
+ System.out.println("comparing " + this.toString() + " to " + other.toString());
+ // URI has piority
+ if ( (!uniqueId.equals("")) && (uniqueId.equals(other.getUniqueId())))
+ {
+ return true;
}
- public boolean equals(DasCoordinateSystem other){
- boolean match = true;
- System.out.println("comparing " + this.toString() + " to " + other.toString());
- // URI has piority
- if ( (! uniqueId.equals("")) && ( uniqueId.equals( other.getUniqueId())))
- return true;
-
- if ( ncbi_tax_id != other.getNCBITaxId()) {
- System.out.println("mismatch in ncbi tax id " + ncbi_tax_id + " != " + other.getNCBITaxId());
- match = false;
- }
- if ( ! version.equals(other.getVersion() )){
- System.out.println("mismatch in version");
- match = false;
- }
- if ( ! category.equals(other.getCategory()) ) {
- System.out.println("mismatch in category");
- match = false;
- }
- if ( ! name.equals(other.getName())) {
- System.out.println("mismatch in name");
- match = false;
- }
- System.out.println(" match: " + match);
-
- return match;
+ if (ncbi_tax_id != other.getNCBITaxId())
+ {
+ System.out.println("mismatch in ncbi tax id " + ncbi_tax_id + " != " +
+ other.getNCBITaxId());
+ match = false;
}
-
- public Object clone() {
- DasCoordinateSystem d = new DasCoordinateSystem();
- d.setTestCode(testCode);
- d.setCategory(category);
- d.setName(name);
- d.setNCBITaxId(ncbi_tax_id);
- d.setUniqueId(getUniqueId());
- d.setOrganismName(getOrganismName());
- d.setVersion(getVersion());
- return d;
+ if (!version.equals(other.getVersion()))
+ {
+ System.out.println("mismatch in version");
+ match = false;
}
-
- public String getTestCode() {
- return testCode;
+ if (!category.equals(other.getCategory()))
+ {
+ System.out.println("mismatch in category");
+ match = false;
}
-
-
-
- public void setTestCode(String testCode) {
- if ( testCode == null)
- testCode = "";
- this.testCode = testCode;
+ if (!name.equals(other.getName()))
+ {
+ System.out.println("mismatch in name");
+ match = false;
}
+ System.out.println(" match: " + match);
-
-
- public void setUniqueId(String id) { uniqueId = id ; }
- public String getUniqueId() { return uniqueId; }
-
- public void setName(String n) { name = n; }
- public String getName() { return name; }
-
- public void setCategory(String c) { category = c;}
- public String getCategory() { return category;}
-
- public void setOrganismName(String t) { organism_name =t;}
- public String getOrganismName() { return organism_name;}
-
- public void setNCBITaxId(int id) { ncbi_tax_id = id;}
- public int getNCBITaxId(){ return ncbi_tax_id ;}
-
-
-
-
- public String getVersion() {
- return version;
+ return match;
+ }
+
+ public int hashCode() {
+ int h = 7;
+
+ h = 31 * h + ( null == name ? 0 : name.hashCode());
+ h = 31 * h + ( null == category ? 0 : category.hashCode());
+
+ return h;
}
- public void setVersion(String version) {
- if ( version == null)
- version = "";
- this.version = version;
+ public Object clone()
+ {
+ DasCoordinateSystem d = new DasCoordinateSystem();
+ d.setTestCode(testCode);
+ d.setCategory(category);
+ d.setName(name);
+ d.setNCBITaxId(ncbi_tax_id);
+ d.setUniqueId(getUniqueId());
+ d.setOrganismName(getOrganismName());
+ d.setVersion(getVersion());
+ return d;
+ }
+
+ public String getTestCode()
+ {
+ return testCode;
+ }
+
+ public void setTestCode(String testCode)
+ {
+ if (testCode == null)
+ {
+ testCode = "";
}
-
- public String toString() {
- String nam = name;
- if ( ! version.equals(""))
- nam += "_" + version;
-
- if ( organism_name.equals("") )
- return nam+","+category ;
- else
- return nam+","+category+"," + organism_name ;
+ this.testCode = testCode;
+ }
+
+ public void setUniqueId(String id)
+ {
+ uniqueId = id;
+ }
+
+ public String getUniqueId()
+ {
+ return uniqueId;
+ }
+
+ public void setName(String n)
+ {
+ name = n;
+ }
+
+ public String getName()
+ {
+ return name;
+ }
+
+ public void setCategory(String c)
+ {
+ category = c;
+ }
+
+ public String getCategory()
+ {
+ return category;
+ }
+
+ public void setOrganismName(String t)
+ {
+ organism_name = t;
+ }
+
+ public String getOrganismName()
+ {
+ return organism_name;
+ }
+
+ public void setNCBITaxId(int id)
+ {
+ ncbi_tax_id = id;
+ }
+
+ public int getNCBITaxId()
+ {
+ return ncbi_tax_id;
+ }
+
+ public String getVersion()
+ {
+ return version;
+ }
+
+ public void setVersion(String version)
+ {
+ if (version == null)
+ {
+ version = "";
}
-
- public static DasCoordinateSystem fromString(String rawString) {
- String[] spl = rawString.split(",");
- DasCoordinateSystem dcs = new DasCoordinateSystem();
- if ( spl.length == 2 ) {
- dcs.setName(spl[0]);
- dcs.setCategory(spl[1]);
- }
- if ( spl.length == 3 ) {
- dcs.setName(spl[0]);
- dcs.setCategory(spl[1]);
- dcs.setOrganismName(spl[2]);
- }
- return dcs;
+ this.version = version;
+ }
+
+ public String toString()
+ {
+ String nam = name;
+ if (!version.equals(""))
+ {
+ nam += "_" + version;
}
+ if (organism_name.equals(""))
+ {
+ return nam + "," + category;
+ }
+ else
+ {
+ return nam + "," + category + "," + organism_name;
+ }
+ }
+
+ public static DasCoordinateSystem fromString(String rawString)
+ {
+ String[] spl = rawString.split(",");
+ DasCoordinateSystem dcs = new DasCoordinateSystem();
+ if (spl.length == 2)
+ {
+ dcs.setName(spl[0]);
+ dcs.setCategory(spl[1]);
+ }
+ if (spl.length == 3)
+ {
+ dcs.setName(spl[0]);
+ dcs.setCategory(spl[1]);
+ dcs.setOrganismName(spl[2]);
+ }
+ return dcs;
+ }
}
git://source.jalview.org / jalview.git / blobdiff