String[] seqs2 = new String[] { seq2, seq1 };
MatrixI res2 = sm.findSimilarities(seqs2, params);
assertFalse(res1.equals(res2));
- assertTrue(res2.equals(new Matrix(new double[][]
+ assertTrue(
+ res2.equals(new Matrix(new double[][]
{ { 16d, 3d }, { 3d, 14d } }), delta));
/*
sm = new ScoreMatrix("Test", "AB".toCharArray(), scores);
assertFalse(sm.isSymmetric()); // [0, 1] != [1, 0]
res1 = sm.findSimilarities(seqs1, params);
- assertTrue(res1.equals(new Matrix(new double[][]
+ assertTrue(
+ res1.equals(new Matrix(new double[][]
{ { 14d, 7d }, { 11d, 16d } }), delta));
/*