+/*
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
+ *
+ * This file is part of Jalview.
+ *
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
+ *
+ * Jalview is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
+ * PURPOSE. See the GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview. If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
+ */
package jalview.ext.jmol;
import jalview.datamodel.SequenceI;
{
try
{
- String testSeq = mcseqs.remove(0).getSequenceAsString();
+ String testSeq = mcseqs.remove(0).getSequenceAsString();
if (!sq.getSequenceAsString().equals(testSeq))
- {
- ++totalFail;
+ {
+ ++totalFail;
System.err.println("Test Failed for " + pdbStr + ". Diff:");
- System.err.println(sq.getSequenceAsString());
- System.err.println(testSeq);
- failedFiles.add(pdbStr);
- }
+ System.err.println(sq.getSequenceAsString());
+ System.err.println(testSeq);
+ failedFiles.add(pdbStr);
+ }
++totalSeqScanned;
} catch (Exception e)
{