JAL-1805 test envirionment separation

[jalview.git] / test / jalview / io / Jalview2xmlTests.java

diff --git a/test/jalview/io/Jalview2xmlTests.java b/test/jalview/io/Jalview2xmlTests.java
index b3e37f4..c03dd71 100644 (file)
--- a/test/jalview/io/Jalview2xmlTests.java
+++ b/test/jalview/io/Jalview2xmlTests.java
@@ -22,14 +22,6 @@ package jalview.io;
 
 import static org.testng.AssertJUnit.assertTrue;
 
-import java.io.File;
-
-import org.testng.Assert;
-import org.testng.AssertJUnit;
-import org.testng.annotations.AfterClass;
-import org.testng.annotations.BeforeClass;
-import org.testng.annotations.Test;
-
 import jalview.api.AlignmentViewPanel;
 import jalview.api.ViewStyleI;
 import jalview.bin.Cache;
@@ -41,6 +33,14 @@ import jalview.gui.Desktop;
 import jalview.schemes.AnnotationColourGradient;
 import jalview.schemes.ColourSchemeI;
 
+import java.io.File;
+
+import org.testng.Assert;
+import org.testng.AssertJUnit;
+import org.testng.annotations.AfterClass;
+import org.testng.annotations.BeforeClass;
+import org.testng.annotations.Test;
+
 public class Jalview2xmlTests
 {
 
@@ -83,7 +83,7 @@ public class Jalview2xmlTests
     return numdsann;
   }
 
-  @Test
+  @Test(groups ={ "Functional" })
   public void testRNAStructureRecovery() throws Exception
   {
     String inFile = "examples/RF00031_folded.stk";
@@ -118,7 +118,7 @@ public class Jalview2xmlTests
             af.getViewport().getGlobalColourScheme() instanceof jalview.schemes.RNAHelicesColour);
   }
 
-  @Test
+  @Test(groups ={ "Functional" })
   public void testTCoffeeScores() throws Exception
   {
     String inFile = "examples/uniref50.fa", inAnnot = "examples/uniref50.score_ascii";
@@ -154,7 +154,7 @@ public class Jalview2xmlTests
             .println("T-Coffee score shading successfully recovered from project.");
   }
 
-  @Test
+  @Test(groups ={ "Functional" })
   public void testColourByAnnotScores() throws Exception
   {
     String inFile = "examples/uniref50.fa", inAnnot = "examples/testdata/uniref50_iupred.jva";
@@ -240,7 +240,7 @@ public class Jalview2xmlTests
             .println("Per sequence (Group) colourscheme successfully applied and recovered.");
   }
 
-  @Test
+  @Test(groups ={ "Functional" })
   public void gatherViewsHere() throws Exception
   {
     int origCount = Desktop.getAlignFrames() == null ? 0 : Desktop
@@ -253,7 +253,7 @@ public class Jalview2xmlTests
 
   }
 
-  @Test
+  @Test(groups ={ "Functional" })
   public void viewRefPdbAnnotation() throws Exception
   {
     Cache.applicationProperties.setProperty("STRUCT_FROM_PDB",
@@ -315,7 +315,7 @@ public class Jalview2xmlTests
     
   }
 
-  @Test
+  @Test(groups ={ "Functional" })
   public void testCopyViewSettings() throws Exception
   {
     AlignFrame af = new jalview.io.FileLoader().LoadFileWaitTillLoaded(