@Test(groups = "Functional")
public void testPfamFormatNoLimits() throws IOException
{
- AlignmentI al = new AppletFormatAdapter().readFile("ASEQ"
- + '\t' + "...--FFAFAFF--", DataSourceType.PASTE,
+ AlignmentI al = new AppletFormatAdapter().readFile(
+ "ASEQ" + '\t' + "...--FFAFAFF--", DataSourceType.PASTE,
FileFormat.Pfam);
Assert.assertEquals(1, al.getHeight(), "Wrong number of sequences");
Assert.assertTrue(al.hasValidSequence(),
@Test(groups = "Functional")
public void testPfamFormatValidLimits() throws IOException
{
- AlignmentI al = new AppletFormatAdapter().readFile("ASEQ/15-25" + '\t'
- + "...--FFAFAFF--", DataSourceType.PASTE, FileFormat.Pfam);
+ AlignmentI al = new AppletFormatAdapter().readFile(
+ "ASEQ/15-25" + '\t' + "...--FFAFAFF--", DataSourceType.PASTE,
+ FileFormat.Pfam);
Assert.assertEquals(1, al.getHeight(), "Wrong number of sequences");
Assert.assertTrue(al.hasValidSequence(),
"Didn't extract limits from PFAM ID");