import static org.testng.Assert.assertSame;
import static org.testng.Assert.assertTrue;
+import jalview.api.AlignViewportI;
import jalview.bin.Cache;
import jalview.bin.Jalview;
import jalview.datamodel.AnnotatedCollectionI;
}
@Override
- public ColourSchemeI getInstance(AnnotatedCollectionI sg,
- Map<SequenceI, SequenceCollectionI> hiddenRepSequences)
+ public ColourSchemeI getInstance(AlignViewportI view,
+ AnnotatedCollectionI sg)
{
- final ColourSchemeI cs1 = ColourSchemes.getInstance()
- .getColourScheme(JalviewColourScheme.Taylor.toString(),
- (AnnotatedCollectionI) null);
- final ColourSchemeI cs2 = ColourSchemes.getInstance()
- .getColourScheme(JalviewColourScheme.Zappo.toString(),
- (AnnotatedCollectionI) null);
+ final ColourSchemeI cs1 = ColourSchemes.getInstance().getColourScheme(
+ JalviewColourScheme.Taylor.toString(),
+ (AnnotatedCollectionI) null);
+ final ColourSchemeI cs2 = ColourSchemes.getInstance().getColourScheme(
+ JalviewColourScheme.Zappo.toString(),
+ (AnnotatedCollectionI) null);
return new Stripy(cs1, cs2);
}
return "stripy";
}
};
-
+
/*
* a colour scheme that is Clustal but using AWT colour equivalents
*/
}
@Override
- public ColourSchemeI getInstance(AnnotatedCollectionI sg,
- Map<SequenceI, SequenceCollectionI> hiddenRepSequences)
+ public ColourSchemeI getInstance(AlignViewportI view,
+ AnnotatedCollectionI sg)
{
- return new MyClustal(sg, hiddenRepSequences);
+ return new MyClustal(sg, view.getHiddenRepSequences());
}
@Override
* in the order in which they are declared in the JalviewColourScheme enum
* (this also determines their order in Colour menus)
*/
- Iterator<ColourSchemeI> schemes = ColourSchemes.getInstance().getColourSchemes().iterator();
+ Iterator<ColourSchemeI> schemes = ColourSchemes.getInstance()
+ .getColourSchemes().iterator();
JalviewColourScheme[] jalviewSchemes = JalviewColourScheme.values();
int i = 0;
while (schemes.hasNext() && i < jalviewSchemes.length)
}
af.closeMenuItem_actionPerformed(true);
}
-
+
@Test(groups = "Functional")
public void testRegisterColourScheme()
{