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(parent: b87ae5a) | patch
JAL-2850 JAL-1766 option to load contig sequence referenced by VCF
authorgmungoc <g.m.carstairs@dundee.ac.uk>
Mon, 4 Dec 2017 15:21:25 +0000 (15:21 +0000)
committergmungoc <g.m.carstairs@dundee.ac.uk>
Mon, 4 Dec 2017 15:21:25 +0000 (15:21 +0000)
commit296593216c47a835f462d1d74a40b41e4818f737
tree29b996ea7cb0e0d37bf5b61db5db59dbce432f62tree | snapshot
parentb87ae5ac68939a1b964682046e8b07958fae219acommit | diff
JAL-2850 JAL-1766 option to load contig sequence referenced by VCF
src/jalview/ext/htsjdk/HtsContigDb.java diff | blob | history
src/jalview/gui/AlignFrame.java diff | blob | history
src/jalview/io/vcf/VCFLoader.java diff | blob | history
test/jalview/ext/htsjdk/TestHtsContigDb.java diff | blob | history
test/jalview/io/vcf/VCFLoaderTest.java diff | blob | history
test/jalview/io/vcf/contigs.fasta [new file with mode: 0644] blob
test/jalview/io/vcf/contigs.fasta.fai [new file with mode: 0644] blob
test/jalview/io/vcf/testVcf.vcf [moved from test/jalview/io/vcf/testVcf.dat with 100% similarity] blob | history
test/jalview/io/vcf/testVcf2.vcf [new file with mode: 0644] blob