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JAL-2850 JAL-1766 option to load contig sequence referenced by VCF
[jalview.git]
/
src
/
jalview
/
io
/
vcf
/
VCFLoader.java
2017-12-04
gmungoc
JAL-2850 JAL-1766 option to load contig sequence refere...
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commitdiff
2017-12-04
gmungoc
JAL-2845 locate reverse strand insertion as complement...
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2017-12-04
gmungoc
JAL-2835 small refactor to only extract transcript...
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2017-12-01
gmungoc
JAL-2835 spike updated to latest (use specific SO term...
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2017-11-23
gmungoc
JAL-2808 update spike to latest (filter range, Present...
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2017-11-15
gmungoc
JAL-2835 spike updated with latest
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2017-10-27
gmungoc
JAL-1793 spike branch updated to latest
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2017-10-20
gmungoc
Push 1793 latest to spike branch
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2017-10-05
gmungoc
JAL-2738 update spikes/mungo
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2017-10-04
gmungoc
JAL-2738 fix bug of premature exit from adding attributes
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2017-10-04
gmungoc
JAL-2738 match consequence "Allele" to VCF allele;...
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2017-10-03
gmungoc
JAL-2738 copy to spikes/mungo
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2017-10-03
gmungoc
JAL-2738 code formatting
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2017-10-02
gmungoc
JAL-2738 code tidy up, null checks &c
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2017-10-02
gmungoc
JAL-2738 filter VEP consequence data to that for curren...
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2017-09-29
gmungoc
JAL-2738 one sequence feature per (SNP) VCF allele
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2017-09-28
gmungoc
JAL-2738 separate thread to load VCF; update FeatureSet...
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2017-09-28
gmungoc
JAL-1796 GeneLociI as distinguished DBRefEntry
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2017-09-26
gmungoc
JAL-2738 transfer VCF variant features to CDS sequences
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2017-09-26
gmungoc
JAL-2738 unit test for reverse strand gene
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2017-09-25
gmungoc
JAL-2738 use complement base for a VCF variant on rever...
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2017-09-25
gmungoc
JAL-2738 one constant in codebase for "alleles" attribu...
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2017-09-25
gmungoc
JAL-2738 extract SNP variants from SNP or MIXED variant...
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2017-09-22
gmungoc
JAL-2738 extract utility method to MappingUtils
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2017-09-22
gmungoc
JAL-2738 correct handling of reverse strand genes
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2017-09-22
gmungoc
JAL-2738 lookup GRCh38/37 gene mapping
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2017-09-21
gmungoc
JAL-2738 compute VCF on peptide, extract AF (allele...
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2017-09-21
gmungoc
JAL-2738 PoC of Load VCF file on to gene sequence
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git://source.jalview.org / jalview.git / history