source.jalview.org Git - jalview.git/commit

author	Ben Soares <b.soares@dundee.ac.uk>
	Sun, 23 Apr 2023 11:35:42 +0000 (12:35 +0100)
committer	Ben Soares <b.soares@dundee.ac.uk>
	Sun, 23 Apr 2023 11:35:42 +0000 (12:35 +0100)
commit	2bb9cad4fa36d64cebbe09bc63732e8dbb4dcb32
tree	71332ee561637636cda7f93ac85571ccda9e5e39	tree \| snapshot
parent	0788111a588187a04dd0d254d70b055274cf2c9d	commit \| diff

JAL-629 Change --open to --append and --opennew to --open. Make --open(new) part of the same default linkedId scheme. Add and adjust tests.

18 files changed:

src/jalview/bin/Commands.java		diff \| blob \| history
src/jalview/bin/argparser/Arg.java		diff \| blob \| history
src/jalview/bin/argparser/ArgParser.java		diff \| blob \| history
src/jalview/bin/argparser/ArgValue.java		diff \| blob \| history
src/jalview/bin/argparser/ArgValues.java		diff \| blob \| history
src/jalview/bin/argparser/ArgValuesMap.java		diff \| blob \| history
src/jalview/util/FileUtils.java		diff \| blob \| history
test/jalview/bin/CommandsTest.java		diff \| blob \| history
test/jalview/bin/CommandsTest2.java		diff \| blob \| history
test/jalview/bin/argparser/ArgParserTest.java		diff \| blob \| history
test/jalview/bin/argparser/testfiles/argfile.autocounter		diff \| blob \| history
test/jalview/bin/argparser/testfiles/argfile0.txt		diff \| blob \| history
test/jalview/bin/argparser/testfiles/argfile1.txt		diff \| blob \| history
test/jalview/bin/argparser/testfiles/dir1/argfile.txt		diff \| blob \| history
test/jalview/bin/argparser/testfiles/dir2/argfile.txt		diff \| blob \| history
test/jalview/bin/argparser/testfiles/dir3/subdir/subdirfile.txt		diff \| blob \| history
test/jalview/bin/commandsTest2.argfile1		diff \| blob \| history
test/jalview/bin/commandsTest2.argfile2		diff \| blob \| history