source.jalview.org Git - jalviewjs.git/commit

git://source.jalview.org / jalviewjs.git / commit

author	hansonr <hansonr@stolaf.edu>
	Fri, 24 Jul 2015 09:33:04 +0000 (10:33 +0100)
committer	hansonr <hansonr@stolaf.edu>
	Fri, 24 Jul 2015 09:33:04 +0000 (10:33 +0100)
commit	6319110ce33faa76ee6cf9832e78faa224510fed
tree	0d12e58a5663da0f8252acd6bf2c81d9273c81d3	tree \| snapshot
parent	7301a2415adab88038b291fc54caeeb3a5a47a44	commit \| diff

JAL-1807 still testing

632 files changed:

bin/MCview/Atom.js		diff \| blob \| history
bin/MCview/Bond.js		diff \| blob \| history
bin/MCview/PDBChain.js		diff \| blob \| history
bin/MCview/PDBfile.js		diff \| blob \| history
bin/MCview/Residue.js		diff \| blob \| history
bin/awt2swing/Button.js		diff \| blob \| history
bin/awt2swing/Canvas.js		diff \| blob \| history
bin/awt2swing/Checkbox.js		diff \| blob \| history
bin/awt2swing/CheckboxMenuItem.js		diff \| blob \| history
bin/awt2swing/Choice.js		diff \| blob \| history
bin/awt2swing/Frame.js		diff \| blob \| history
bin/awt2swing/Label.js		diff \| blob \| history
bin/awt2swing/Menu.js		diff \| blob \| history
bin/awt2swing/MenuBar.js		diff \| blob \| history
bin/awt2swing/MenuItem.js		diff \| blob \| history
bin/awt2swing/Panel.js		diff \| blob \| history
bin/awt2swing/PopupMenu.js		diff \| blob \| history
bin/awt2swing/ScrollPane.js		diff \| blob \| history
bin/awt2swing/Scrollbar.js		diff \| blob \| history
bin/awt2swing/TextArea.js		diff \| blob \| history
bin/awt2swing/TextField.js		diff \| blob \| history
bin/com/stevesoft/pat/AmpersandRule.js		diff \| blob \| history
bin/com/stevesoft/pat/Any.js		diff \| blob \| history
bin/com/stevesoft/pat/BackG.js		diff \| blob \| history
bin/com/stevesoft/pat/BackMatch.js		diff \| blob \| history
bin/com/stevesoft/pat/BackRefRule.js		diff \| blob \| history
bin/com/stevesoft/pat/Backup.js		diff \| blob \| history
bin/com/stevesoft/pat/BasicStringBufferLike.js		diff \| blob \| history
bin/com/stevesoft/pat/Bits.js		diff \| blob \| history
bin/com/stevesoft/pat/Boundary.js		diff \| blob \| history
bin/com/stevesoft/pat/Bracket.js		diff \| blob \| history
bin/com/stevesoft/pat/CaseMgr.js		diff \| blob \| history
bin/com/stevesoft/pat/ChangeRule.js		diff \| blob \| history
bin/com/stevesoft/pat/CodeRule.js		diff \| blob \| history
bin/com/stevesoft/pat/Ctrl.js		diff \| blob \| history
bin/com/stevesoft/pat/Custom.js		diff \| blob \| history
bin/com/stevesoft/pat/CustomEndpoint.js		diff \| blob \| history
bin/com/stevesoft/pat/DirFileRegex.js		diff \| blob \| history
bin/com/stevesoft/pat/DotMulti.js		diff \| blob \| history
bin/com/stevesoft/pat/End.js		diff \| blob \| history
bin/com/stevesoft/pat/FastBracket.js		diff \| blob \| history
bin/com/stevesoft/pat/FastMulti.js		diff \| blob \| history
bin/com/stevesoft/pat/FileRegex.js		diff \| blob \| history
bin/com/stevesoft/pat/Group.js		diff \| blob \| history
bin/com/stevesoft/pat/LeftRule.js		diff \| blob \| history
bin/com/stevesoft/pat/MessageManager.js		diff \| blob \| history
bin/com/stevesoft/pat/Multi.js		diff \| blob \| history
bin/com/stevesoft/pat/MultiMin.js		diff \| blob \| history
bin/com/stevesoft/pat/Multi_stage2.js		diff \| blob \| history
bin/com/stevesoft/pat/NoPattern.js		diff \| blob \| history
bin/com/stevesoft/pat/NonDirFileRegex.js		diff \| blob \| history
bin/com/stevesoft/pat/NotImplementedError.js		diff \| blob \| history
bin/com/stevesoft/pat/NullPattern.js		diff \| blob \| history
bin/com/stevesoft/pat/NullRule.js		diff \| blob \| history
bin/com/stevesoft/pat/Or.js		diff \| blob \| history
bin/com/stevesoft/pat/OrMark.js		diff \| blob \| history
bin/com/stevesoft/pat/PartialBuffer.js		diff \| blob \| history
bin/com/stevesoft/pat/Pattern.js		diff \| blob \| history
bin/com/stevesoft/pat/PatternSub.js		diff \| blob \| history
bin/com/stevesoft/pat/PopRule.js		diff \| blob \| history
bin/com/stevesoft/pat/Prop.js		diff \| blob \| history
bin/com/stevesoft/pat/Pthings.js		diff \| blob \| history
bin/com/stevesoft/pat/PushRule.js		diff \| blob \| history
bin/com/stevesoft/pat/RBuffer.js		diff \| blob \| history
bin/com/stevesoft/pat/Range.js		diff \| blob \| history
bin/com/stevesoft/pat/RegOpt.js		diff \| blob \| history
bin/com/stevesoft/pat/RegRes.js		diff \| blob \| history
bin/com/stevesoft/pat/RegSyntax.js		diff \| blob \| history
bin/com/stevesoft/pat/RegSyntaxError.js		diff \| blob \| history
bin/com/stevesoft/pat/Regex.js		diff \| blob \| history
bin/com/stevesoft/pat/RegexReader.js		diff \| blob \| history
bin/com/stevesoft/pat/RegexTokenizer.js		diff \| blob \| history
bin/com/stevesoft/pat/RegexWriter.js		diff \| blob \| history
bin/com/stevesoft/pat/ReplaceRule.js		diff \| blob \| history
bin/com/stevesoft/pat/Replacer.js		diff \| blob \| history
bin/com/stevesoft/pat/RightRule.js		diff \| blob \| history
bin/com/stevesoft/pat/Rthings.js		diff \| blob \| history
bin/com/stevesoft/pat/RuleHolder.js		diff \| blob \| history
bin/com/stevesoft/pat/Skip.js		diff \| blob \| history
bin/com/stevesoft/pat/Skip2.js		diff \| blob \| history
bin/com/stevesoft/pat/SkipBMH.js		diff \| blob \| history
bin/com/stevesoft/pat/Skipped.js		diff \| blob \| history
bin/com/stevesoft/pat/SpecialRule.js		diff \| blob \| history
bin/com/stevesoft/pat/Start.js		diff \| blob \| history
bin/com/stevesoft/pat/StrPos.js		diff \| blob \| history
bin/com/stevesoft/pat/StringBufferLike.js		diff \| blob \| history
bin/com/stevesoft/pat/StringLike.js		diff \| blob \| history
bin/com/stevesoft/pat/StringRule.js		diff \| blob \| history
bin/com/stevesoft/pat/SubMark.js		diff \| blob \| history
bin/com/stevesoft/pat/TransPat.js		diff \| blob \| history
bin/com/stevesoft/pat/Transformer.js		diff \| blob \| history
bin/com/stevesoft/pat/UniValidator.js		diff \| blob \| history
bin/com/stevesoft/pat/Util.js		diff \| blob \| history
bin/com/stevesoft/pat/Validator.js		diff \| blob \| history
bin/com/stevesoft/pat/WantMoreTextReplaceRule.js		diff \| blob \| history
bin/com/stevesoft/pat/lookAhead.js		diff \| blob \| history
bin/com/stevesoft/pat/oneChar.js		diff \| blob \| history
bin/com/stevesoft/pat/package.js		diff \| blob \| history
bin/com/stevesoft/pat/parsePerl.js		diff \| blob \| history
bin/com/stevesoft/pat/patInf.js		diff \| blob \| history
bin/com/stevesoft/pat/patInt.js		diff \| blob \| history
bin/com/stevesoft/pat/wrap/CharArrayBufferWrap.js		diff \| blob \| history
bin/com/stevesoft/pat/wrap/CharArrayWrap.js		diff \| blob \| history
bin/com/stevesoft/pat/wrap/RandomAccessFileWrap.js		diff \| blob \| history
bin/com/stevesoft/pat/wrap/StringBufferWrap.js		diff \| blob \| history
bin/com/stevesoft/pat/wrap/StringWrap.js		diff \| blob \| history
bin/com/stevesoft/pat/wrap/WriterWrap.js		diff \| blob \| history
bin/fr/orsay/lri/varna/models/rna/RNA.js		diff \| blob \| history
bin/jalview/analysis/AAFrequency.js		diff \| blob \| history
bin/jalview/analysis/AlignSeq.js		diff \| blob \| history
bin/jalview/analysis/AlignmentAnnotationUtils.js		diff \| blob \| history
bin/jalview/analysis/AlignmentSorter.js		diff \| blob \| history
bin/jalview/analysis/AlignmentUtils.js		diff \| blob \| history
bin/jalview/analysis/AnnotationSorter.js		diff \| blob \| history
bin/jalview/analysis/CodingUtils.js		diff \| blob \| history
bin/jalview/analysis/CodonComparator.js		diff \| blob \| history
bin/jalview/analysis/Conservation.js		diff \| blob \| history
bin/jalview/analysis/Dna.js		diff \| blob \| history
bin/jalview/analysis/Finder.js		diff \| blob \| history
bin/jalview/analysis/Grouping.js		diff \| blob \| history
bin/jalview/analysis/NJTree.js		diff \| blob \| history
bin/jalview/analysis/PCA.js		diff \| blob \| history
bin/jalview/analysis/ParseProperties.js		diff \| blob \| history
bin/jalview/analysis/Rna.js		diff \| blob \| history
bin/jalview/analysis/SecStrConsensus.js		diff \| blob \| history
bin/jalview/analysis/SeqsetUtils.js		diff \| blob \| history
bin/jalview/analysis/SequenceIdMatcher.js		diff \| blob \| history
bin/jalview/analysis/StructureFrequency.js		diff \| blob \| history
bin/jalview/analysis/WUSSParseException.js		diff \| blob \| history
bin/jalview/analysis/package.js		diff \| blob \| history
bin/jalview/analysis/scoremodels/FeatureScoreModel.js		diff \| blob \| history
bin/jalview/analysis/scoremodels/PIDScoreModel.js		diff \| blob \| history
bin/jalview/analysis/scoremodels/PairwiseSeqScoreModel.js		diff \| blob \| history
bin/jalview/analysis/scoremodels/SWScoreModel.js		diff \| blob \| history
bin/jalview/api/AlignCalcManagerI.js		diff \| blob \| history
bin/jalview/api/AlignCalcWorkerI.js		diff \| blob \| history
bin/jalview/api/AlignExportSettingI.js		diff \| blob \| history
bin/jalview/api/AlignViewControllerGuiI.js		diff \| blob \| history
bin/jalview/api/AlignViewControllerI.js		diff \| blob \| history
bin/jalview/api/AlignViewportI.js		diff \| blob \| history
bin/jalview/api/AlignmentViewPanel.js		diff \| blob \| history
bin/jalview/api/ComplexAlignFile.js		diff \| blob \| history
bin/jalview/api/FeatureRenderer.js		diff \| blob \| history
bin/jalview/api/FeatureSettingsControllerI.js		diff \| blob \| history
bin/jalview/api/FeatureSettingsModelI.js		diff \| blob \| history
bin/jalview/api/FeaturesDisplayedI.js		diff \| blob \| history
bin/jalview/api/OOMHandlerI.js		diff \| blob \| history
bin/jalview/api/RotatableCanvasI.js		diff \| blob \| history
bin/jalview/api/SequenceRenderer.js		diff \| blob \| history
bin/jalview/api/SequenceStructureBinding.js		diff \| blob \| history
bin/jalview/api/SplitContainerI.js		diff \| blob \| history
bin/jalview/api/StructureSelectionManagerProvider.js		diff \| blob \| history
bin/jalview/api/ViewStyleI.js		diff \| blob \| history
bin/jalview/api/analysis/ScoreModelI.js		diff \| blob \| history
bin/jalview/api/analysis/ViewBasedAnalysisI.js		diff \| blob \| history
bin/jalview/api/structures/JalviewStructureDisplayI.js		diff \| blob \| history
bin/jalview/appletgui/APopupMenu.js		diff \| blob \| history
bin/jalview/appletgui/AlignFrame.js		diff \| blob \| history
bin/jalview/appletgui/AlignViewport.js		diff \| blob \| history
bin/jalview/appletgui/AlignmentPanel.js		diff \| blob \| history
bin/jalview/appletgui/AnnotationColourChooser.js		diff \| blob \| history
bin/jalview/appletgui/AnnotationColumnChooser.js		diff \| blob \| history
bin/jalview/appletgui/AnnotationLabels.js		diff \| blob \| history
bin/jalview/appletgui/AnnotationPanel.js		diff \| blob \| history
bin/jalview/appletgui/AnnotationRowFilter.js		diff \| blob \| history
bin/jalview/appletgui/AppletJmol.js		diff \| blob \| history
bin/jalview/appletgui/AppletJmolBinding.js		diff \| blob \| history
bin/jalview/appletgui/CutAndPasteTransfer.js		diff \| blob \| history
bin/jalview/appletgui/EditNameDialog.js		diff \| blob \| history
bin/jalview/appletgui/EmbmenuFrame.js		diff \| blob \| history
bin/jalview/appletgui/ExtJmol.js		diff \| blob \| history
bin/jalview/appletgui/FeatureColourChooser.js		diff \| blob \| history
bin/jalview/appletgui/FeatureRenderer.js		diff \| blob \| history
bin/jalview/appletgui/FeatureSettings.js		diff \| blob \| history
bin/jalview/appletgui/Finder.js		diff \| blob \| history
bin/jalview/appletgui/FontChooser.js		diff \| blob \| history
bin/jalview/appletgui/IdCanvas.js		diff \| blob \| history
bin/jalview/appletgui/IdPanel.js		diff \| blob \| history
bin/jalview/appletgui/IdwidthAdjuster.js		diff \| blob \| history
bin/jalview/appletgui/JVDialog.js		diff \| blob \| history
bin/jalview/appletgui/OverviewPanel.js		diff \| blob \| history
bin/jalview/appletgui/PCAPanel.js		diff \| blob \| history
bin/jalview/appletgui/PaintRefresher.js		diff \| blob \| history
bin/jalview/appletgui/PairwiseAlignPanel.js		diff \| blob \| history
bin/jalview/appletgui/RedundancyPanel.js		diff \| blob \| history
bin/jalview/appletgui/RotatableCanvas.js		diff \| blob \| history
bin/jalview/appletgui/ScalePanel.js		diff \| blob \| history
bin/jalview/appletgui/SeqCanvas.js		diff \| blob \| history
bin/jalview/appletgui/SeqPanel.js		diff \| blob \| history
bin/jalview/appletgui/SequenceRenderer.js		diff \| blob \| history
bin/jalview/appletgui/SliderPanel.js		diff \| blob \| history
bin/jalview/appletgui/SplitFrame.js		diff \| blob \| history
bin/jalview/appletgui/TitledPanel.js		diff \| blob \| history
bin/jalview/appletgui/Tooltip.js		diff \| blob \| history
bin/jalview/appletgui/TreeCanvas.js		diff \| blob \| history
bin/jalview/appletgui/TreePanel.js		diff \| blob \| history
bin/jalview/appletgui/UserDefinedColours.js		diff \| blob \| history
bin/jalview/bin/Cache.js		diff \| blob \| history
bin/jalview/bin/JalviewLite.js		diff \| blob \| history
bin/jalview/commands/ChangeCaseCommand.js		diff \| blob \| history
bin/jalview/commands/CommandI.js		diff \| blob \| history
bin/jalview/commands/EditCommand.js		diff \| blob \| history
bin/jalview/commands/OrderCommand.js		diff \| blob \| history
bin/jalview/commands/RemoveGapColCommand.js		diff \| blob \| history
bin/jalview/commands/RemoveGapsCommand.js		diff \| blob \| history
bin/jalview/commands/SlideSequencesCommand.js		diff \| blob \| history
bin/jalview/commands/TrimRegionCommand.js		diff \| blob \| history
bin/jalview/controller/AlignViewController.js		diff \| blob \| history
bin/jalview/controller/FeatureSettingsController.js		diff \| blob \| history
bin/jalview/controller/FeatureSettingsControllerGuiI.js		diff \| blob \| history
bin/jalview/datamodel/ASequence.js		diff \| blob \| history
bin/jalview/datamodel/ASequenceI.js		diff \| blob \| history
bin/jalview/datamodel/AlignedCodon.js		diff \| blob \| history
bin/jalview/datamodel/AlignedCodonFrame.js		diff \| blob \| history
bin/jalview/datamodel/Alignment.js		diff \| blob \| history
bin/jalview/datamodel/AlignmentAnnotation.js		diff \| blob \| history
bin/jalview/datamodel/AlignmentI.js		diff \| blob \| history
bin/jalview/datamodel/AlignmentOrder.js		diff \| blob \| history
bin/jalview/datamodel/AlignmentView.js		diff \| blob \| history
bin/jalview/datamodel/AnnotatedCollectionI.js		diff \| blob \| history
bin/jalview/datamodel/Annotation.js		diff \| blob \| history
bin/jalview/datamodel/BinaryNode.js		diff \| blob \| history
bin/jalview/datamodel/BinarySequence.js		diff \| blob \| history
bin/jalview/datamodel/CigarArray.js		diff \| blob \| history
bin/jalview/datamodel/CigarBase.js		diff \| blob \| history
bin/jalview/datamodel/CigarCigar.js		diff \| blob \| history
bin/jalview/datamodel/CigarSimple.js		diff \| blob \| history
bin/jalview/datamodel/ColumnSelection.js		diff \| blob \| history
bin/jalview/datamodel/DBRefEntry.js		diff \| blob \| history
bin/jalview/datamodel/DBRefSource.js		diff \| blob \| history
bin/jalview/datamodel/FeatureProperties.js		diff \| blob \| history
bin/jalview/datamodel/GraphLine.js		diff \| blob \| history
bin/jalview/datamodel/HiddenSequences.js		diff \| blob \| history
bin/jalview/datamodel/IncompleteCodonException.js		diff \| blob \| history
bin/jalview/datamodel/Mapping.js		diff \| blob \| history
bin/jalview/datamodel/NodeTransformI.js		diff \| blob \| history
bin/jalview/datamodel/PDBEntry.js		diff \| blob \| history
bin/jalview/datamodel/Provenance.js		diff \| blob \| history
bin/jalview/datamodel/ProvenanceEntry.js		diff \| blob \| history
bin/jalview/datamodel/RnaViewerModel.js		diff \| blob \| history
bin/jalview/datamodel/SearchResults.js		diff \| blob \| history
bin/jalview/datamodel/SecondaryStructureAnnotation.js		diff \| blob \| history
bin/jalview/datamodel/SeqCigar.js		diff \| blob \| history
bin/jalview/datamodel/Sequence.js		diff \| blob \| history
bin/jalview/datamodel/SequenceCollectionI.js		diff \| blob \| history
bin/jalview/datamodel/SequenceDummy.js		diff \| blob \| history
bin/jalview/datamodel/SequenceFeature.js		diff \| blob \| history
bin/jalview/datamodel/SequenceGroup.js		diff \| blob \| history
bin/jalview/datamodel/SequenceI.js		diff \| blob \| history
bin/jalview/datamodel/SequenceNode.js		diff \| blob \| history
bin/jalview/datamodel/SequencePoint.js		diff \| blob \| history
bin/jalview/datamodel/StructureViewerModel.js		diff \| blob \| history
bin/jalview/datamodel/UniprotEntry.js		diff \| blob \| history
bin/jalview/datamodel/UniprotFile.js		diff \| blob \| history
bin/jalview/datamodel/UniprotProteinName.js		diff \| blob \| history
bin/jalview/datamodel/UniprotSequence.js		diff \| blob \| history
bin/jalview/ext/jmol/JmolCommands.js		diff \| blob \| history
bin/jalview/ext/varna/JalviewVarnaBinding.js		diff \| blob \| history
bin/jalview/ext/varna/RnaModel.js		diff \| blob \| history
bin/jalview/ext/varna/VarnaCommands.js		diff \| blob \| history
bin/jalview/io/AlignFile.js		diff \| blob \| history
bin/jalview/io/AlignmentProperties.js		diff \| blob \| history
bin/jalview/io/AnnotationFile.js		diff \| blob \| history
bin/jalview/io/AppletFormatAdapter.js		diff \| blob \| history
bin/jalview/io/FastaFile.js		diff \| blob \| history
bin/jalview/io/FeaturesFile.js		diff \| blob \| history
bin/jalview/io/FileParse.js		diff \| blob \| history
bin/jalview/io/IdentifyFile.js		diff \| blob \| history
bin/jalview/io/JPredFile.js		diff \| blob \| history
bin/jalview/io/JnetAnnotationMaker.js		diff \| blob \| history
bin/jalview/io/MSFfile.js		diff \| blob \| history
bin/jalview/io/ModellerDescription.js		diff \| blob \| history
bin/jalview/io/NewickFile.js		diff \| blob \| history
bin/jalview/io/PIRFile.js		diff \| blob \| history
bin/jalview/io/PfamFile.js		diff \| blob \| history
bin/jalview/io/PhylipFile.js		diff \| blob \| history
bin/jalview/io/PileUpfile.js		diff \| blob \| history
bin/jalview/io/SequenceAnnotationReport.js		diff \| blob \| history
bin/jalview/io/TCoffeeScoreFile.js		diff \| blob \| history
bin/jalview/javascript/JSFunctionExec.js		diff \| blob \| history
bin/jalview/javascript/JalviewLiteJsApi.js		diff \| blob \| history
bin/jalview/javascript/JsCallBack.js		diff \| blob \| history
bin/jalview/javascript/JsSelectionSender.js		diff \| blob \| history
bin/jalview/javascript/MouseOverListener.js		diff \| blob \| history
bin/jalview/javascript/MouseOverStructureListener.js		diff \| blob \| history
bin/jalview/jsdev/Constants.js		diff \| blob \| history
bin/jalview/jsdev/GenericFileAdapter.js		diff \| blob \| history
bin/jalview/jsdev/JSRegex.js		diff \| blob \| history
bin/jalview/jsdev/JavaScriptRegExp.js		diff \| blob \| history
bin/jalview/jsdev/RegExp.js		diff \| blob \| history
bin/jalview/jsdev/api/RegExpInterface.js		diff \| blob \| history
bin/jalview/jsdev/api/VarnaRNA.js		diff \| blob \| history
bin/jalview/math/AlignmentDimension.js		diff \| blob \| history
bin/jalview/math/Matrix.js		diff \| blob \| history
bin/jalview/math/RotatableMatrix.js		diff \| blob \| history
bin/jalview/renderer/AnnotationRenderer.js		diff \| blob \| history
bin/jalview/renderer/AwtRenderPanelI.js		diff \| blob \| history
bin/jalview/renderer/seqfeatures/FeatureRenderer.js		diff \| blob \| history
bin/jalview/schemes/AnnotationColourGradient.js		diff \| blob \| history
bin/jalview/schemes/Blosum62ColourScheme.js		diff \| blob \| history
bin/jalview/schemes/BuriedColourScheme.js		diff \| blob \| history
bin/jalview/schemes/ClustalxColourScheme.js		diff \| blob \| history
bin/jalview/schemes/ColourSchemeI.js		diff \| blob \| history
bin/jalview/schemes/ColourSchemeProperty.js		diff \| blob \| history
bin/jalview/schemes/Consensus.js		diff \| blob \| history
bin/jalview/schemes/CovariationColourScheme.js		diff \| blob \| history
bin/jalview/schemes/FollowerColourScheme.js		diff \| blob \| history
bin/jalview/schemes/GraduatedColor.js		diff \| blob \| history
bin/jalview/schemes/HelixColourScheme.js		diff \| blob \| history
bin/jalview/schemes/HydrophobicColourScheme.js		diff \| blob \| history
bin/jalview/schemes/NucleotideColourScheme.js		diff \| blob \| history
bin/jalview/schemes/PIDColourScheme.js		diff \| blob \| history
bin/jalview/schemes/PurinePyrimidineColourScheme.js		diff \| blob \| history
bin/jalview/schemes/RNAHelicesColour.js		diff \| blob \| history
bin/jalview/schemes/RNAHelicesColourChooser.js		diff \| blob \| history
bin/jalview/schemes/RNAInteractionColourScheme.js		diff \| blob \| history
bin/jalview/schemes/ResidueColourScheme.js		diff \| blob \| history
bin/jalview/schemes/ResidueProperties.js		diff \| blob \| history
bin/jalview/schemes/ScoreColourScheme.js		diff \| blob \| history
bin/jalview/schemes/ScoreMatrix.js		diff \| blob \| history
bin/jalview/schemes/StrandColourScheme.js		diff \| blob \| history
bin/jalview/schemes/TCoffeeColourScheme.js		diff \| blob \| history
bin/jalview/schemes/TaylorColourScheme.js		diff \| blob \| history
bin/jalview/schemes/TurnColourScheme.js		diff \| blob \| history
bin/jalview/schemes/UserColourScheme.js		diff \| blob \| history
bin/jalview/schemes/ZappoColourScheme.js		diff \| blob \| history
bin/jalview/schemes/package.js		diff \| blob \| history
bin/jalview/structure/AlignmentViewPanelListener.js		diff \| blob \| history
bin/jalview/structure/AtomSpec.js		diff \| blob \| history
bin/jalview/structure/CommandListener.js		diff \| blob \| history
bin/jalview/structure/SecondaryStructureListener.js		diff \| blob \| history
bin/jalview/structure/SelectionListener.js		diff \| blob \| history
bin/jalview/structure/SelectionSource.js		diff \| blob \| history
bin/jalview/structure/SequenceListener.js		diff \| blob \| history
bin/jalview/structure/StructureListener.js		diff \| blob \| history
bin/jalview/structure/StructureMapping.js		diff \| blob \| history
bin/jalview/structure/StructureMappingcommandSet.js		diff \| blob \| history
bin/jalview/structure/StructureSelectionManager.js		diff \| blob \| history
bin/jalview/structure/VamsasListener.js		diff \| blob \| history
bin/jalview/structure/VamsasSource.js		diff \| blob \| history
bin/jalview/structures/models/AAStructureBindingModel.js		diff \| blob \| history
bin/jalview/structures/models/SequenceStructureBindingModel.js		diff \| blob \| history
bin/jalview/util/ColorUtils.js		diff \| blob \| history
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