JAL-1880 handle sequence offsets properly when mapping cDNA to protein
authorgmungoc <g.m.carstairs@dundee.ac.uk>
Mon, 14 Sep 2015 08:42:07 +0000 (09:42 +0100)
committergmungoc <g.m.carstairs@dundee.ac.uk>
Mon, 14 Sep 2015 08:42:07 +0000 (09:42 +0100)
commit6781f0461eeaaf9bc285fc340ed897cab26524ad
tree439ee89032845e3a252995383570032a1d9e5f44
parent2e87920be1283b0dfab1e0dd5bf4127493c96241
JAL-1880 handle sequence offsets properly when mapping cDNA to protein
12 files changed:
src/jalview/analysis/AlignmentUtils.java
src/jalview/appletgui/SeqPanel.java
src/jalview/commands/EditCommand.java
src/jalview/datamodel/AlignedCodonFrame.java
src/jalview/datamodel/Mapping.java
src/jalview/gui/AlignViewport.java
src/jalview/gui/SeqPanel.java
test/jalview/analysis/AlignmentUtilsTests.java
test/jalview/commands/EditCommandTest.java
test/jalview/datamodel/AlignedCodonFrameTest.java
test/jalview/datamodel/AlignedCodonIteratorTest.java
test/jalview/datamodel/AlignmentTest.java