JAL-2371 CollectionColourScheme wraps ColourSchemeI
authorgmungoc <g.m.carstairs@dundee.ac.uk>
Wed, 4 Jan 2017 15:21:19 +0000 (15:21 +0000)
committergmungoc <g.m.carstairs@dundee.ac.uk>
Wed, 4 Jan 2017 15:21:19 +0000 (15:21 +0000)
commit8e1be43e250107a4d86898bd554cf03098fa5957
treebd26ccd1a92d93a3d4a3f7db5fcce5ac92194c1e
parent8b55eedb9d76a8c65b80f756c4412bf029906bf7
JAL-2371 CollectionColourScheme wraps ColourSchemeI
57 files changed:
examples/groovy/colourSchemes.groovy
src/jalview/analysis/Conservation.java
src/jalview/api/AlignViewportI.java
src/jalview/appletgui/APopupMenu.java
src/jalview/appletgui/AlignFrame.java
src/jalview/appletgui/AlignViewport.java
src/jalview/appletgui/AnnotationColourChooser.java
src/jalview/appletgui/SeqPanel.java
src/jalview/appletgui/SequenceRenderer.java
src/jalview/appletgui/SliderPanel.java
src/jalview/appletgui/TreeCanvas.java
src/jalview/appletgui/UserDefinedColours.java
src/jalview/datamodel/SequenceGroup.java
src/jalview/gui/AlignFrame.java
src/jalview/gui/AlignViewport.java
src/jalview/gui/AnnotationColourChooser.java
src/jalview/gui/AnnotationRowFilter.java
src/jalview/gui/Jalview2XML.java
src/jalview/gui/Jalview2XML_V1.java
src/jalview/gui/PopupMenu.java
src/jalview/gui/SeqPanel.java
src/jalview/gui/SequenceRenderer.java
src/jalview/gui/SliderPanel.java
src/jalview/gui/TreeCanvas.java
src/jalview/gui/UserDefinedColours.java
src/jalview/io/AnnotationFile.java
src/jalview/io/JSONFile.java
src/jalview/renderer/AnnotationRenderer.java
src/jalview/schemes/AnnotationColourGradient.java
src/jalview/schemes/Blosum62ColourScheme.java
src/jalview/schemes/ClustalxColourScheme.java
src/jalview/schemes/CollectionColourScheme.java [new file with mode: 0644]
src/jalview/schemes/CollectionColourSchemeI.java [new file with mode: 0644]
src/jalview/schemes/ColourSchemeI.java
src/jalview/schemes/FollowerColourScheme.java
src/jalview/schemes/NucleotideColourScheme.java
src/jalview/schemes/PIDColourScheme.java
src/jalview/schemes/PurinePyrimidineColourScheme.java
src/jalview/schemes/RNAHelicesColourChooser.java
src/jalview/schemes/RNAInteractionColourScheme.java
src/jalview/schemes/ResidueColourScheme.java
src/jalview/schemes/ScoreColourScheme.java
src/jalview/schemes/TaylorColourScheme.java
src/jalview/schemes/UserColourScheme.java
src/jalview/schemes/ZappoColourScheme.java
src/jalview/util/MappingUtils.java
src/jalview/viewmodel/AlignmentViewport.java
src/jalview/workers/ConsensusThread.java
test/jalview/gui/AlignViewportTest.java
test/jalview/io/JSONFileTest.java
test/jalview/io/Jalview2xmlTests.java
test/jalview/schemes/Blosum62ColourSchemeTest.java [new file with mode: 0644]
test/jalview/schemes/ClustalxColourSchemeTest.java
test/jalview/schemes/CollectionColourSchemeTest.java [new file with mode: 0644]
test/jalview/schemes/ColourSchemesTest.java
test/jalview/schemes/PIDColourSchemeTest.java [new file with mode: 0644]
test/jalview/schemes/ResidueColourSchemeTest.java