JAL-3251 SequenceToSequenceMapping now SequenceMapping, MappingType++
authorgmungoc <g.m.carstairs@dundee.ac.uk>
Wed, 8 May 2019 11:30:57 +0000 (12:30 +0100)
committergmungoc <g.m.carstairs@dundee.ac.uk>
Wed, 8 May 2019 11:30:57 +0000 (12:30 +0100)
commit947109cebef3e98693ffc0a70b5bffcbd32217e2
treec945445009e7512b464f9c89c7e7bc8ea7cfd748
parent825ef108d5bfcf9b3e3eb9422b27658c80ab0854
JAL-3251 SequenceToSequenceMapping now SequenceMapping, MappingType++
13 files changed:
src/jalview/analysis/AlignmentUtils.java
src/jalview/datamodel/AlignedCodonFrame.java
src/jalview/datamodel/Alignment.java
src/jalview/datamodel/MappingType.java
src/jalview/datamodel/SequenceMapping.java [new file with mode: 0644]
src/jalview/datamodel/SequenceMappings.java [new file with mode: 0644]
src/jalview/io/gff/ExonerateHelper.java
src/jalview/io/gff/Gff3Helper.java
src/jalview/io/gff/GffHelperBase.java
test/jalview/analysis/CrossRefTest.java
test/jalview/datamodel/AlignmentTest.java
test/jalview/datamodel/MappingTypeTest.java
test/jalview/io/gff/ExonerateHelperTest.java