JAL-2418 add GPL to main sources
authorJim Procter <jprocter@issues.jalview.org>
Wed, 16 Aug 2017 21:30:21 +0000 (22:30 +0100)
committerJim Procter <jprocter@issues.jalview.org>
Wed, 16 Aug 2017 21:36:26 +0000 (22:36 +0100)
commitf6123f656fa387e11f506dedd09672a0d0ff5ac5
tree100073c2c8b4962adcd986887eb69b21f0aa64ef
parent3d0101179759ef157b088ea135423cd909512d9f
JAL-2418 add GPL to main sources
38 files changed:
src/jalview/analysis/AverageDistanceTree.java
src/jalview/analysis/TreeBuilder.java
src/jalview/analysis/scoremodels/DistanceScoreModel.java
src/jalview/analysis/scoremodels/PIDModel.java
src/jalview/analysis/scoremodels/ScoreModels.java
src/jalview/analysis/scoremodels/SimilarityParams.java
src/jalview/analysis/scoremodels/SimilarityScoreModel.java
src/jalview/api/AlignmentColsCollectionI.java
src/jalview/api/AlignmentRowsCollectionI.java
src/jalview/api/analysis/PairwiseScoreModelI.java
src/jalview/api/analysis/ScoreModelI.java
src/jalview/api/analysis/SimilarityParamsI.java
src/jalview/ext/rbvi/chimera/AtomSpecModel.java
src/jalview/gui/ColourMenuHelper.java
src/jalview/gui/ComboBoxTooltipRenderer.java
src/jalview/io/AlignmentFileReaderI.java
src/jalview/io/AlignmentFileWriterI.java
src/jalview/io/DataSourceType.java
src/jalview/io/FileFormat.java
src/jalview/io/FileFormatException.java
src/jalview/io/FileFormatI.java
src/jalview/io/FileFormats.java
src/jalview/io/HTMLOutput.java [changed mode: 0755->0644]
src/jalview/io/ScoreMatrixFile.java
src/jalview/io/cache/AppCache.java
src/jalview/io/cache/JvCacheableInputBox.java
src/jalview/math/MatrixI.java
src/jalview/math/SparseMatrix.java
src/jalview/renderer/ResidueShader.java
src/jalview/renderer/ResidueShaderI.java
src/jalview/renderer/seqfeatures/FeatureColourFinder.java
src/jalview/schemes/ColourSchemeLoader.java
src/jalview/schemes/ColourSchemes.java
src/jalview/schemes/JalviewColourScheme.java
src/jalview/util/RangeComparator.java
src/jalview/util/SetUtils.java
src/jalview/viewmodel/OverviewDimensionsHideHidden.java
src/jalview/viewmodel/ViewportListenerI.java